MirGeneDB ID | Cpo-Mir-346 |
Family name |
MIR-346 (all species) |
Seed |
GUCUGCC |
Species |
Guinea pig (Cavia porcellus) |
MiRBase ID |
cpo-mir-346
|
Paralogues |
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Orthologues |
Bta-Mir-346
Cfa-Mir-346
Cja-Mir-346
Eca-Mir-346
Ete-Mir-346
Hsa-Mir-346
Laf-Mir-346
Mml-Mir-346
Mmr-Mir-346
Mmu-Mir-346
Ocu-Mir-346
Pab-Mir-346
Rno-Mir-346
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (cavPor3) |
scaffold_62: 5918308-5918367 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
GGGCGCGGGGAGGUCUCUGUGUUGGGCGUCUGUCUGCCCGCAUGCCUGCCUCUCUGUUGCUCUGAAGGAGGCAGGGGCUGGGCCUGCAGCUGCCUGGGCAGAGCGGCUCCUAUGUGGGAC
Get precursor sequence
|
Structure | 10 20 30 40 50
GGGCGCGGGGAGGUCUC---| G UG U CU - AUG CUGUUG
UGU U GGCG CUGU GCCC GC CCUGCCUCU \
ACG G CCGU GACG CGGG CG GGACGGAGG C
CAGGGUGUAUCCUCGGCGAG^ - GU C UC U G-- AAGUCU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
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Mature sequence |
Cpo-Mir-346_5p |
mirBase accession | MIMAT0047184 |
Sequence |
0- UGUCUGCCCGCAUGCCUGCCUCU -23
Get sequence
|
Star sequence |
Cpo-Mir-346_3p* (predicted) |
mirBase accession | MIMAT0047185 |
Sequence |
38- AGGCAGGGGCUGGGCCUGCAGC -60
Get sequence
|