MirGeneDB ID | Ete-Mir-346 |
Family name |
MIR-346 (all species) |
Seed |
GUCUGCC |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-346
Cfa-Mir-346
Cja-Mir-346
Cpo-Mir-346
Eca-Mir-346
Hsa-Mir-346
Laf-Mir-346
Mml-Mir-346
Mmr-Mir-346
Mmu-Mir-346
Ocu-Mir-346
Pab-Mir-346
Rno-Mir-346
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980329: 19481279-19481336 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
AGCGUGGGGGAGGUCUCUGUGUUGGGCGCCUGUCUGCCCACCUGCCUGCCUCUCUGUCAUCUGAAGGAGGCAGGGGCCGGGCUGCAGCUGCCUGGGCAGAGCGGCUCCUGCGGAACGC
Get precursor sequence
|
Structure | 10 20 30 40 50
AGCGUGGGGGAGGUCUC---| G UG C CU A- UG CUGUC
UGU U GGCG CUGU GCCC CC CCUGCCUCU A
ACG G CCGU GACG CGGG GG GGACGGAGG U
CGCAAGGCGUCCUCGGCGAG^ - GU C U- CC -- AAGUC
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ete-Mir-346_5p (predicted) |
mirBase accession | None |
Sequence |
0- UGUCUGCCCACCUGCCUGCCUCU -23
Get sequence
|
Star sequence |
Ete-Mir-346_3p* (predicted) |
mirBase accession | None |
Sequence |
37- AGGCAGGGGCCGGGCUGCAGC -58
Get sequence
|