MirGeneDB 3.0

MirGeneDB ID

Ete-Mir-346

Family name MIR-346 (all species)
Seed GUCUGCC
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues
Orthologues Bta-Mir-346  Cfa-Mir-346  Cja-Mir-346  Cpo-Mir-346  Eca-Mir-346  Hsa-Mir-346  Laf-Mir-346  Mml-Mir-346  Mmr-Mir-346  Mmu-Mir-346  Ocu-Mir-346  Pab-Mir-346  Rno-Mir-346 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(echTel2)
JH980329: 19481279-19481336 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AGCGUGGGGGAGGUCUCUGUGUUGGGCGCCUGUCUGCCCACCUGCCUGCCUCUCUGUCAUCUGAAGGAGGCAGGGGCCGGGCUGCAGCUGCCUGGGCAGAGCGGCUCCUGCGGAACGC
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Structure
        10           20        30        40         50         
AGCGUGGGGGAGGUCUC---|  G UG    C    CU    A-  UG         CUGUC 
                    UGU U  GGCG CUGU  GCCC  CC  CCUGCCUCU     A
                    ACG G  CCGU GACG  CGGG  GG  GGACGGAGG     U
CGCAAGGCGUCCUCGGCGAG^  - GU    C    U-    CC  --         AAGUC 
      110       100         90         80          70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Ete-Mir-346_5p (predicted)

mirBase accessionNone
Sequence
0- UGUCUGCCCACCUGCCUGCCUCU -23
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Star sequence

Ete-Mir-346_3p* (predicted)

mirBase accessionNone
Sequence
37- AGGCAGGGGCCGGGCUGCAGC -58
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