| MirGeneDB ID | Eca-Mir-346 |
|---|
| Family name |
MIR-346 (all species) |
|---|
| Seed |
GUCUGCC |
|---|
| Species |
Horse (Equus caballus) |
|---|
| MiRBase ID |
eca-mir-346
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bta-Mir-346
Cfa-Mir-346
Cja-Mir-346
Cpo-Mir-346
Ete-Mir-346
Hsa-Mir-346
Laf-Mir-346
Mml-Mir-346
Mmr-Mir-346
Mmu-Mir-346
Ocu-Mir-346
Pab-Mir-346
Rno-Mir-346
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(GCA_002863925.1_EquCab3.0) |
CM009148.1: 84971779-84971838 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGCGUGUGGGAGGUCUCUGUGUUGGGCGUCUGUCUGCCCGCAUGCCUGCCUCUCUGUUGCUCUGAAGGAGGCAGGGGCUGGGCCUGCAGCUGCCUGGGCAGAGCGGCUCCUGCGUGGGAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGCGUGUGGGAGGUCUC---| G UG U CU - AUG CUGUUG
UGU U GGCG CUGU GCCC GC CCUGCCUCU \
ACG G CCGU GACG CGGG CG GGACGGAGG C
CAGGGUGCGUCCUCGGCGAG^ - GU C UC U G-- AAGUCU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
Er |
| |
|
|
|---|
| Mature sequence |
Eca-Mir-346_5p |
| mirBase accession | MIMAT0012902 |
|---|
| Sequence |
0- UGUCUGCCCGCAUGCCUGCCUCU -23
Get sequence
|
|---|
| Star sequence |
Eca-Mir-346_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
38- AGGCAGGGGCUGGGCCUGCAGC -60
Get sequence
|
|---|
