MirGeneDB 3.0

MirGeneDB ID

Cmi-Mir-205-P1

Family name MIR-205 (all species)
Seed CCUUCAU
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-205-P2  Cmi-Mir-205-P4 
Orthologues Lch-Mir-205-P1  Mal-Mir-205-P1-v1  Mal-Mir-205-P1-v2  Pma-Mir-205-o1  Sto-Mir-205-P1  Xla-Mir-205-P1a  Xla-Mir-205-P1b  Xtr-Mir-205-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI635869.1: 4038642-4038703 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGCUUGAAGUGCAAUGGCACACUCUGGUGUCCUUCAUUCCACCGGGUCCUGUGUCCGAUUCUGAUCCAGAUUCCCAGUGAGAUGAAGCACAUGGGAGGUGUCAAUGAUCAACGAAAAUCAU
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Structure
        10           20        30        40         50          
UGGCUUGAAGUGCAAUG---|   A    G    C      UC   C   UC-   UGUCCGA 
                    GCAC CUCU GUGU CUUCAU  CAC GGG   CUG       \
                    UGUG GAGG UACA GAAGUA  GUG CCC   GAC       U
UACUAAAAGCAACUAGUAAC^   -    G    C      GA   A   UUA   CUAGUCU 
120       110       100         90        80        70
Deep sequencing
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CommentThere are Dicer cuts -1 and -2 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-205-P1_5p

mirBase accessionNone
Sequence
0- UCCUUCAUUCCACCGGGUCCUG -22
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Star sequence

Cmi-Mir-205-P1_3p*

mirBase accessionNone
Sequence
39- GAUUCCCAGUGAGAUGAAGCACA -62
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