Mir-205-P1

MirGeneDB ID

Cmi-Mir-205-P1

Family name

MIR-205 (all species)

Seed

CCUUCAU

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-205-P2 Cmi-Mir-205-P4

Orthologues

Lch-Mir-205-P1 Loc-Mir-205-P1 Mal-Mir-205-P1-v1 Mal-Mir-205-P1-v2 Pma-Mir-205-o1 Sto-Mir-205-P1 Xla-Mir-205-P1a Xla-Mir-205-P1b Xtr-Mir-205-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635869.1: 4038642-4038703 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGGCUUGAAGUGCAAUGGCACACUCUGGUGUCCUUCAUUCCACCGGGUCCUGUGUCCGAUUCUGAUCCAGAUUCCCAGUGAGAUGAAGCACAUGGGAGGUGUCAAUGAUCAACGAAAAUCAU

Get precursor sequence

Structure

        10           20        30        40         50          
UGGCUUGAAGUGCAAUG---|   A    G    C      UC   C   UC-   UGUCCGA 
                    GCAC CUCU GUGU CUUCAU  CAC GGG   CUG       \
                    UGUG GAGG UACA GAAGUA  GUG CCC   GAC       U
UACUAAAAGCAACUAGUAAC^   -    G    C      GA   A   UUA   CUAGUCU 
120       110       100         90        80        70

Deep sequencing

Go to detailed chart

Comment

There are Dicer cuts -1 and -2 on both arms.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bl	Br	Ey	Gi	Gl	He	In	Ki	Li	Mu	Ov	Pa	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-205-P1_5p

mirBase accession

None

Sequence

0- UCCUUCAUUCCACCGGGUCCUG -22

Get sequence

Star sequence

Cmi-Mir-205-P1_3p*

mirBase accession

None

Sequence

39- GAUUCCCAGUGAGAUGAAGCACA -62

Get sequence