MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-205-P1

Family name MIR-205 (all species)
Seed CCUUCAU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-205b
Paralogues Xtr-Mir-205-P4 
Orthologues Cmi-Mir-205-P1  Lch-Mir-205-P1  Loc-Mir-205-P1  Mal-Mir-205-P1-v1  Mal-Mir-205-P1-v2  Pma-Mir-205-o1  Sto-Mir-205-P1  Xla-Mir-205-P1a  Xla-Mir-205-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr4: 125249616-125249675 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACUUGCCGUCUGAAGGGCCCCUGCUGCUGUCCUUCAUUCCACCGGAUCCUGUGUAAAUAUAAUCCAGAUUCCCAGUGGCAUGAAGUGCAUUAGCUGAGCCUGUGAGCACCUACCAAGGG
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Structure
        10           20        30        40         50         
CACUUGCCGUCUGAAGG---| CCCU    C  UC      U    C-   UC   UGUAAA 
                    GC    GCUG UG  CUUCAU CCAC  GGA  CUG      \
                    CG    CGAU AC  GAAGUA GGUG  CCU  GAC      U
GGGAACCAUCCACGAGUGUC^ AGU-    U  GU      C    AC   UA   CUAAUA 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-205-P1_5p
mirBase accessionMIMAT0003622
Sequence 
0- UCCUUCAUUCCACCGGAUCCUG -22
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Proposed targets TargetScanVert: xtr-miR-205b
Star sequence

Xtr-Mir-205-P1_3p*
mirBase accessionNone
Sequence 
38- AUUCCCAGUGGCAUGAAGUGCA -60
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