| MirGeneDB ID | Lch-Mir-205-P1 |
|---|---|
| Family name | MIR-205 (all species) |
| Seed | CCUUCAU |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-205-P4 |
| Orthologues | Cmi-Mir-205-P1 Mal-Mir-205-P1-v1 Mal-Mir-205-P1-v2 Pma-Mir-205-o1 Sto-Mir-205-P1 Xla-Mir-205-P1a Xla-Mir-205-P1b Xtr-Mir-205-P1 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126690.1: 1612973-1613031 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | AUGCUGGACUGCAAGAGGCUUCUCCUGCUGUCCUUCAUCCCUCCGGAUCCCUGUGCACUGAAUCCAGAUUCCCAGUGGGAUGAAGUGUAGCUGGUUGGGCCAUCGCUGCUUGAAGAUGAGet precursor sequence |
| Structure | 10 20 30 40 50 AUGCUGGACUGCAAGAG-- CU U UC UCC-| UCC GUGCAC GCUU CC GCUG CUUCAUCCC GGA CU \ CGGG GG CGAU GAAGUAGGG CCU GA U AGUAGAAGUUCGUCGCUAC UU U GU UGAC^ UA- CCUAAG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Lch-Mir-205-P1_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UCCUUCAUCCCUCCGGAUCCCU -22
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|
| Star sequence | Lch-Mir-205-P1_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- AUUCCCAGUGGGAUGAAGUGUA -59
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|
