MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-205-P1

Family name MIR-205 (all species)
Seed CCUUCAU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-205-P4 
Orthologues Cmi-Mir-205-P1  Loc-Mir-205-P1  Mal-Mir-205-P1-v1  Mal-Mir-205-P1-v2  Pma-Mir-205-o1  Sto-Mir-205-P1  Xla-Mir-205-P1a  Xla-Mir-205-P1b  Xtr-Mir-205-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126690.1: 1612973-1613031 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUGCUGGACUGCAAGAGGCUUCUCCUGCUGUCCUUCAUCCCUCCGGAUCCCUGUGCACUGAAUCCAGAUUCCCAGUGGGAUGAAGUGUAGCUGGUUGGGCCAUCGCUGCUUGAAGAUGA
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Structure
        10          20        30        40         50         
AUGCUGGACUGCAAGAG--    CU  U    UC         UCC-|  UCC  GUGCAC 
                   GCUU  CC GCUG  CUUCAUCCC    GGA   CU      \
                   CGGG  GG CGAU  GAAGUAGGG    CCU   GA      U
AGUAGAAGUUCGUCGCUAC    UU  U    GU         UGAC^  UA-  CCUAAG 
       110       100        90        80        70         60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Mature sequence

Lch-Mir-205-P1_5p (predicted)

mirBase accessionNone
Sequence
0- UCCUUCAUCCCUCCGGAUCCCU -22
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Star sequence

Lch-Mir-205-P1_3p* (predicted)

mirBase accessionNone
Sequence
37- AUUCCCAGUGGGAUGAAGUGUA -59
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