MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-205-P1b

Family name MIR-205 (all species)
Seed UUCCCAG
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-205-P1a  Xla-Mir-205-P4c  Xla-Mir-205-P4d 
Orthologues Cmi-Mir-205-P1  Lch-Mir-205-P1  Loc-Mir-205-P1  Mal-Mir-205-P1-v1  Mal-Mir-205-P1-v2  Pma-Mir-205-o1  Sto-Mir-205-P1  Xtr-Mir-205-P1 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030731.1: 108536073-108536132 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUUUUCCUUCUAAAGGGCCCCUGCUGCUGUCCUUCAUUCCACCGGAUCCUGUGUAAAUAUAAUCCAGAUUCCCAGUGGCAUGAAGUGCAUUAGCUGAGCCUGUGAGCACCUACCAAGGA
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Structure
        10           20        30        40         50         
CAUUUUCCUUCUAAAGG---| CCCU    C  UC      U    C-   UC  GUGUAAA 
                    GC    GCUG UG  CUUCAU CCAC  GGA  CU       \
                    CG    CGAU AC  GAAGUA GGUG  CCU  GA       U
AGGAACCAUCCACGAGUGUC^ AGU-    U  GU      C    AC   UA  CCUAAUA 
.       110       100         90        80        70        60
Deep sequencing
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CommentThe 3' end of the 3p arm appears to be monouridylated.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Eg Em Em He Ki Re St St
Star sequence

Xla-Mir-205-P1b_5p*
mirBase accessionNone
Sequence 
0- UCCUUCAUUCCACCGGAUCCU -21
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Mature sequence

Xla-Mir-205-P1b_3p
mirBase accessionNone
Sequence 
38- AUUCCCAGUGGCAUGAAGUGCA -60
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