MirGeneDB ID | Loc-Mir-205-P1 |
Family name |
MIR-205 (all species) |
Seed |
UUCCCAG |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
|
Paralogues |
Loc-Mir-205-P4
Loc-Mir-205-P4-as
|
Orthologues |
Cmi-Mir-205-P1
Lch-Mir-205-P1
Mal-Mir-205-P1-v1
Mal-Mir-205-P1-v2
Pma-Mir-205-o1
Sto-Mir-205-P1
Xla-Mir-205-P1a
Xla-Mir-205-P1b
Xtr-Mir-205-P1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (LepOcu1) |
LG5: 51307018-51307075 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CACUGGCUGGCUGAUCGGCUCUUCCUGCUGUCCUUCAUUCCACCGGAUCCUGUUCCCUGACUGCAGAUUCCCAGUGGGAUGAGGCACAGCAUGGCGGGCGCUGAGCAACAGCAGCUGC
Get precursor sequence
|
Structure | 10 20 30 40 50
CACUGGCUGGCUGAUCG-- UU - C C-| UC GUUCCC
GCUC CC UGCUGU CUUCAUUCCAC GGA CU \
CGGG GG ACGACA GGAGUAGGGUG CCU GA U
CGUCGACGACAACGAGUCG C- U C AC^ UA CGUCAG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Star sequence |
Loc-Mir-205-P1_5p* |
mirBase accession | None |
Sequence |
0- UCCUUCAUUCCACCGGAUCCU -21
Get sequence
|
Mature sequence |
Loc-Mir-205-P1_3p |
mirBase accession | None |
Sequence |
36- AUUCCCAGUGGGAUGAGGCACA -58
Get sequence
|