MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-205-P4

Family name MIR-205 (all species)
Seed CCUUCAU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-205-P1  Loc-Mir-205-P4-as 
Orthologues Aca-Mir-205-P4  Ami-Mir-205-P4  Bta-Mir-205-P4  Cfa-Mir-205-P4  Cja-Mir-205-P4  Cli-Mir-205-P4  Cmi-Mir-205-P4  Cpi-Mir-205-P4  Cpo-Mir-205-P4  Dno-Mir-205-P4  Dre-Mir-205-P4a  Eca-Mir-205-P4  Ete-Mir-205-P4  Gga-Mir-205-P4  Gja-Mir-205-P4  Gmo-Mir-205-P4a  Gmo-Mir-205-P4b  Hsa-Mir-205-P4  Laf-Mir-205-P4  Lch-Mir-205-P4  Mal-Mir-205-P4a  Mal-Mir-205-P4b  Mdo-Mir-205-P4  Mml-Mir-205-P4  Mmr-Mir-205-P4  Mmu-Mir-205-P4  Mun-Mir-205-P4  Neu-Mir-205-P4  Oan-Mir-205-P4  Ocu-Mir-205-P4  Pab-Mir-205-P4  Pbv-Mir-205-P4  Rno-Mir-205-P4  Sha-Mir-205-P4  Spt-Mir-205-P4  Sto-Mir-205-P4  Tgu-Mir-205-P4  Tni-Mir-205-P4a  Xla-Mir-205-P4c  Xla-Mir-205-P4d  Xtr-Mir-205-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG3: 30391194-30391253 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUUUCUCUUCAGAAAUGUCCAUGAAUUCUAUCCUUCAUUCCACCGGAGUCUGUGUCUUUAACCAAUCAGAUUUCAGUGGUGUGAAGUGUAAGAGACAUGGAGCUCACUCGUCAGGAAGAU
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Structure
        10          20        30        40        50         
CUUUCUCUUCAGAAAUG--|     AA UC  UC      U    C        UGUCUU 
                   UCCAUG  U  UA  CUUCAU CCAC GGAGUCUG      U
                   AGGUAC  A  AU  GAAGUG GGUG CUUUAGAC      A
UAGAAGGACUGCUCACUCG^     AG GA  GU      U    A        UAACCA 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 5p arm.
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-205-P4_5p
mirBase accessionNone
Sequence 
0- UCCUUCAUUCCACCGGAGUCUG -22
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Star sequence

Loc-Mir-205-P4_3p*
mirBase accessionNone
Sequence 
38- GAUUUCAGUGGUGUGAAGUGUA -60
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