Mir-205-P4

MirGeneDB ID

Ami-Mir-205-P4

Family name

MIR-205 (all species)

Seed

CCUUCAU

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-205a

Paralogues

Ami-Mir-205-P2

Orthologues

Aca-Mir-205-P4 Bta-Mir-205-P4 Cfa-Mir-205-P4 Cja-Mir-205-P4 Cli-Mir-205-P4 Cmi-Mir-205-P4 Cpi-Mir-205-P4 Cpo-Mir-205-P4 Dno-Mir-205-P4 Dre-Mir-205-P4a Eca-Mir-205-P4 Ete-Mir-205-P4 Gga-Mir-205-P4 Gja-Mir-205-P4 Gmo-Mir-205-P4a Gmo-Mir-205-P4b Hsa-Mir-205-P4 Laf-Mir-205-P4 Lch-Mir-205-P4 Loc-Mir-205-P4 Loc-Mir-205-P4-as Mal-Mir-205-P4a Mal-Mir-205-P4b Mdo-Mir-205-P4 Mml-Mir-205-P4 Mmr-Mir-205-P4 Mmu-Mir-205-P4 Mun-Mir-205-P4 Neu-Mir-205-P4 Oan-Mir-205-P4 Ocu-Mir-205-P4 Pab-Mir-205-P4 Pbv-Mir-205-P4 Rno-Mir-205-P4 Sha-Mir-205-P4 Spt-Mir-205-P4 Sto-Mir-205-P4 Tgu-Mir-205-P4 Tni-Mir-205-P4a Xla-Mir-205-P4c Xla-Mir-205-P4d Xtr-Mir-205-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017713418.1: 182498-182556 [-] UCSC

Precursor
(pre-Mir +30nt flank)

UGAGUUAAGAAUGAUCCAUGGAUUCUGUUGUCCUUCAUUCCACCGGAGUCUGUCUCAUACCUAAUCAGAUUUCAGUGGAGUGAAGCACAAGAGACAUGGAGUUGAAUCAGCAACGAGAG

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Structure

        10        20          30        40        50         
UGAGUUAAGAAUGAUCCAUGGAU--|  G    C           C        UCUCAU 
                         UCU UUGU CUUCAUUCCAC GGAGUCUG      \
                         AGA AACA GAAGUGAGGUG CUUUAGAC      A
GAGAGCAACGACUAAGUUGAGGUAC^  G    C           A        UAAUCC 
       110       100        90        80        70        60

Deep sequencing

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Comment

There is a second Dicer cut +1 on the 5p arm.

3' NTU

Motifs

Tissue expression

To

Mature sequence

Ami-Mir-205-P4_5p

mirBase accession

MIMAT0038228

Sequence

0- UCCUUCAUUCCACCGGAGUCUG -22

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Star sequence

Ami-Mir-205-P4_3p*

mirBase accession

MIMAT0038229

Sequence

37- GAUUUCAGUGGAGUGAAGCACA -59

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