Mir-205-P4

MirGeneDB ID

Mdo-Mir-205-P4

Family name

MIR-205 (all species)

Seed

CCUUCAU

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-205a

Paralogues

Orthologues

Aca-Mir-205-P4 Ami-Mir-205-P4 Bta-Mir-205-P4 Cfa-Mir-205-P4 Cja-Mir-205-P4 Cli-Mir-205-P4 Cmi-Mir-205-P4 Cpi-Mir-205-P4 Cpo-Mir-205-P4 Dno-Mir-205-P4 Dre-Mir-205-P4a Eca-Mir-205-P4 Ete-Mir-205-P4 Gga-Mir-205-P4 Gja-Mir-205-P4 Gmo-Mir-205-P4a Gmo-Mir-205-P4b Hsa-Mir-205-P4 Laf-Mir-205-P4 Lch-Mir-205-P4 Loc-Mir-205-P4 Loc-Mir-205-P4-as Mal-Mir-205-P4a Mal-Mir-205-P4b Mml-Mir-205-P4 Mmr-Mir-205-P4 Mmu-Mir-205-P4 Mun-Mir-205-P4 Neu-Mir-205-P4 Oan-Mir-205-P4 Ocu-Mir-205-P4 Pab-Mir-205-P4 Pbv-Mir-205-P4 Rno-Mir-205-P4 Sha-Mir-205-P4 Spt-Mir-205-P4 Sto-Mir-205-P4 Tgu-Mir-205-P4 Tni-Mir-205-P4a Xla-Mir-205-P4c Xla-Mir-205-P4d Xtr-Mir-205-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(monDom5_add)

2: 116544499-116544557 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAGCUCAGGAUGAUCCAUGAAUUUCUCUUGUCCUUCAUUCCACCGGAGUCUGUCUCAUAUCUAAUCAGAUUUCAGUGGAGUGAAGCAUAAGAGGCAUGGAGUUGACUCAGCAUCAGCGG

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Structure

        10        20          30        40        50         
GAGCUCAGGAUGAUCCAUGAAUU--|       C           C        UCUCAU 
                         UCUCUUGU CUUCAUUCCAC GGAGUCUG      \
                         GGAGAAUA GAAGUGAGGUG CUUUAGAC      A
GGCGACUACGACUCAGUUGAGGUAC^       C           A        UAAUCU 
       110       100        90        80        70        60

Deep sequencing

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Comment

There is a second Dicer cut +1 on the 5p arm.

3' NTU

Unknown

Motifs

Tissue expression

Br	Ce	He	Ki	Te

Mature sequence

Mdo-Mir-205-P4_5p

mirBase accession

MIMAT0012749

Sequence

0- UCCUUCAUUCCACCGGAGUCUG -22

Get sequence

Proposed targets

TargetScanVert: mdo-miR-205a

Star sequence

Mdo-Mir-205-P4_3p* (predicted)

mirBase accession

None

Sequence

37- GAUUUCAGUGGAGUGAAGCAUA -59

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