MirGeneDB ID | Gmo-Mir-205-P4b |
Family name |
MIR-205 (all species) |
Seed |
CCUUCAU |
Species |
Cod (Gadus morhua) |
MiRBase ID |
gmo-mir-205-2
|
Paralogues |
Gmo-Mir-205-P4a
|
Orthologues |
Aca-Mir-205-P4
Ami-Mir-205-P4
Bta-Mir-205-P4
Cfa-Mir-205-P4
Cja-Mir-205-P4
Cli-Mir-205-P4
Cmi-Mir-205-P4
Cpi-Mir-205-P4
Cpo-Mir-205-P4
Dno-Mir-205-P4
Eca-Mir-205-P4
Ete-Mir-205-P4
Gga-Mir-205-P4
Gja-Mir-205-P4
Hsa-Mir-205-P4
Laf-Mir-205-P4
Lch-Mir-205-P4
Loc-Mir-205-P4
Loc-Mir-205-P4-as
Mal-Mir-205-P4b
Mdo-Mir-205-P4
Mml-Mir-205-P4
Mmr-Mir-205-P4
Mmu-Mir-205-P4
Mun-Mir-205-P4
Neu-Mir-205-P4
Oan-Mir-205-P4
Ocu-Mir-205-P4
Pab-Mir-205-P4
Pbv-Mir-205-P4
Rno-Mir-205-P4
Sha-Mir-205-P4
Spt-Mir-205-P4
Sto-Mir-205-P4
Tgu-Mir-205-P4
Xtr-Mir-205-P4
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Vertebrata
|
Genome context (Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_168: 849071-849128 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUGCUGCAAAGGAACCAUCCAUGCAUUCUGUCCUUCAUUCCACCGGAGUCUGUCUUGAGCCAAUCAGAUUUCAGUGGCGUGAAGAAUAAGAGGCAUGGAAUUUGUCGUCCGCACGGAU
Get precursor sequence
|
Structure | 10 20 30 40 50
CUGCUGCAAAGGAACCA--| A GUC- U C UCUUG
UCCAUGC UUCU CUUCAU CCAC GGAGUCUG A
AGGUACG GAGA GAAGUG GGUG CUUUAGAC G
UAGGCACGCCUGCUGUUUA^ - AUAA C A UAACC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut +1 on the 5p arm. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Gmo-Mir-205-P4b_5p |
mirBase accession | MIMAT0044127 |
Sequence |
0- UCCUUCAUUCCACCGGAGUCUG -22
Get sequence
|
Star sequence |
Gmo-Mir-205-P4b_3p* |
mirBase accession | MIMAT0044136 |
Sequence |
36- GAUUUCAGUGGCGUGAAGAAUA -58
Get sequence
|