Mir-205-P4

MirGeneDB ID

Bta-Mir-205-P4

Family name

MIR-205 (all species)

Seed

CCUUCAU

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-205

Paralogues

Orthologues

Aca-Mir-205-P4 Ami-Mir-205-P4 Cfa-Mir-205-P4 Cja-Mir-205-P4 Cli-Mir-205-P4 Cmi-Mir-205-P4 Cpi-Mir-205-P4 Cpo-Mir-205-P4 Dno-Mir-205-P4 Dre-Mir-205-P4a Eca-Mir-205-P4 Ete-Mir-205-P4 Gga-Mir-205-P4 Gja-Mir-205-P4 Gmo-Mir-205-P4a Gmo-Mir-205-P4b Hsa-Mir-205-P4 Laf-Mir-205-P4 Lch-Mir-205-P4 Loc-Mir-205-P4 Loc-Mir-205-P4-as Mal-Mir-205-P4a Mal-Mir-205-P4b Mdo-Mir-205-P4 Mml-Mir-205-P4 Mmr-Mir-205-P4 Mmu-Mir-205-P4 Mun-Mir-205-P4 Neu-Mir-205-P4 Oan-Mir-205-P4 Ocu-Mir-205-P4 Pab-Mir-205-P4 Pbv-Mir-205-P4 Rno-Mir-205-P4 Sha-Mir-205-P4 Spt-Mir-205-P4 Sto-Mir-205-P4 Tgu-Mir-205-P4 Tni-Mir-205-P4a Xla-Mir-205-P4c Xla-Mir-205-P4d Xtr-Mir-205-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037343.1: 73900711-73900769 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGACCUCAGAUAGUCCAUGUGCUUCUCUUGUCCUUCAUUCCACCGGAGUCUGUCUCGUACCCAACCAGAUUUCAGUGGAGUGAAGUUCAGGAGGCGUGGAACUGACACCGGAGCUGCCG

Get precursor sequence

Structure

        10        20          30        40        50         
AGACCUCAGAUAGUCCAUGU--| U       UC           C        UCUCGU 
                      GC UCUCUUG  CUUCAUUCCAC GGAGUCUG      \
                      UG GGAGGAC  GAAGUGAGGUG CUUUAGAC      A
GCCGUCGAGGCCACAGUCAAGG^ C       UU           A        CAACCC 
       110       100        90        80        70        60

Deep sequencing

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Comment

There is a second Dicer cut +1 on the 5p arm.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-205-P4_5p

mirBase accession

MIMAT0003545

Sequence

0- UCCUUCAUUCCACCGGAGUCUG -22

Get sequence

Proposed targets

TargetScanVert: bta-miR-205

Star sequence

Bta-Mir-205-P4_3p*

mirBase accession

None

Sequence

37- GAUUUCAGUGGAGUGAAGUUCA -59

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