MirGeneDB 3.0

MirGeneDB ID

Spt-Mir-205-P4

Family name MIR-205 (all species)
Seed CCUUCAU
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-205-P2 
Orthologues Aca-Mir-205-P4  Ami-Mir-205-P4  Bta-Mir-205-P4  Cfa-Mir-205-P4  Cja-Mir-205-P4  Cli-Mir-205-P4  Cmi-Mir-205-P4  Cpi-Mir-205-P4  Cpo-Mir-205-P4  Dno-Mir-205-P4  Dre-Mir-205-P4a  Eca-Mir-205-P4  Ete-Mir-205-P4  Gga-Mir-205-P4  Gja-Mir-205-P4  Gmo-Mir-205-P4a  Gmo-Mir-205-P4b  Hsa-Mir-205-P4  Laf-Mir-205-P4  Lch-Mir-205-P4  Loc-Mir-205-P4  Loc-Mir-205-P4-as  Mal-Mir-205-P4a  Mal-Mir-205-P4b  Mdo-Mir-205-P4  Mml-Mir-205-P4  Mmr-Mir-205-P4  Mmu-Mir-205-P4  Mun-Mir-205-P4  Neu-Mir-205-P4  Oan-Mir-205-P4  Ocu-Mir-205-P4  Pab-Mir-205-P4  Pbv-Mir-205-P4  Rno-Mir-205-P4  Sha-Mir-205-P4  Sto-Mir-205-P4  Tgu-Mir-205-P4  Tni-Mir-205-P4a  Xla-Mir-205-P4c  Xla-Mir-205-P4d  Xtr-Mir-205-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01002275.1: 437140-437198 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAGUUAAGAAUGAUCCAUGGGUUCUGUUGUCCUUCAUUCCACCGGAGUCUGUCUCAUACCUAAUCAGAUUUCAGUGGAGUGAAGCACAAGAGACAUGGAGUAGAAUCAACAAGAAGAG
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Structure
        10        20          30        40        50         
CAAGUUAAGAAUGAUCCAUGGGU--|  G    C           C        UCUCAU 
                         UCU UUGU CUUCAUUCCAC GGAGUCUG      \
                         AGA AACA GAAGUGAGGUG CUUUAGAC      A
GAGAAGAACAACUAAGAUGAGGUAC^  G    C           A        UAAUCC 
       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Mature sequence

Spt-Mir-205-P4_5p (predicted)

mirBase accessionNone
Sequence
0- UCCUUCAUUCCACCGGAGUCUG -22
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Star sequence

Spt-Mir-205-P4_3p* (predicted)

mirBase accessionNone
Sequence
37- GAUUUCAGUGGAGUGAAGCACA -59
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