MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-205-P4d

Family name MIR-205 (all species)
Seed CCUUCAU
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-205
Paralogues Xla-Mir-205-P1a  Xla-Mir-205-P1b  Xla-Mir-205-P4c 
Orthologues Aca-Mir-205-P4  Ami-Mir-205-P4  Bta-Mir-205-P4  Cfa-Mir-205-P4  Cja-Mir-205-P4  Cli-Mir-205-P4  Cmi-Mir-205-P4  Cpi-Mir-205-P4  Cpo-Mir-205-P4  Dno-Mir-205-P4  Eca-Mir-205-P4  Ete-Mir-205-P4  Gga-Mir-205-P4  Gja-Mir-205-P4  Hsa-Mir-205-P4  Laf-Mir-205-P4  Lch-Mir-205-P4  Loc-Mir-205-P4  Loc-Mir-205-P4-as  Mdo-Mir-205-P4  Mml-Mir-205-P4  Mmr-Mir-205-P4  Mmu-Mir-205-P4  Mun-Mir-205-P4  Neu-Mir-205-P4  Oan-Mir-205-P4  Ocu-Mir-205-P4  Pab-Mir-205-P4  Pbv-Mir-205-P4  Rno-Mir-205-P4  Sha-Mir-205-P4  Spt-Mir-205-P4  Sto-Mir-205-P4  Tgu-Mir-205-P4  Xtr-Mir-205-P4 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030727.1: 39955338-39955396 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUUUAAAGAACGAUCCACGUGUCCUGCUGUCCUUCAUUCCACCGGAGUCUGUCUCAUACAUAAUCAGAUUUCAGUAGAGUGAAGCACAAGAGGCAUGUAGCAGUCUCAGCACAACCUG
Get precursor sequence
Structure
        10           20        30        40        50         
GGUUUAAAGAACGAUCC---|    U   GC   C        C  C        UCUCAU 
                    ACGUG CCU  UGU CUUCAUUC AC GGAGUCUG      \
                    UGUAC GGA  ACA GAAGUGAG UG CUUUAGAC      A
GUCCAACACGACUCUGACGA^    -   GA   C        A  A        UAAUAC 
       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut +1 on the 5p arm.
3' NTU No
MotifsNo
Tissue expression
-   +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-205-P4d_5p
mirBase accessionMIMAT0011142
Sequence 
0- UCCUUCAUUCCACCGGAGUCUG -22
Get sequence
Star sequence

Xla-Mir-205-P4d_3p*
mirBase accessionNone
Sequence 
37- GAUUUCAGUAGAGUGAAGCACA -59
Get sequence