Mir-205-P4d

MirGeneDB ID

Xla-Mir-205-P4d

Family name

MIR-205 (all species)

Seed

CCUUCAU

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-205

Paralogues

Xla-Mir-205-P1a Xla-Mir-205-P1b Xla-Mir-205-P4c

Orthologues

Aca-Mir-205-P4 Ami-Mir-205-P4 Bta-Mir-205-P4 Cfa-Mir-205-P4 Cja-Mir-205-P4 Cli-Mir-205-P4 Cmi-Mir-205-P4 Cpi-Mir-205-P4 Cpo-Mir-205-P4 Dno-Mir-205-P4 Eca-Mir-205-P4 Ete-Mir-205-P4 Gga-Mir-205-P4 Gja-Mir-205-P4 Hsa-Mir-205-P4 Laf-Mir-205-P4 Lch-Mir-205-P4 Loc-Mir-205-P4 Loc-Mir-205-P4-as Mdo-Mir-205-P4 Mml-Mir-205-P4 Mmr-Mir-205-P4 Mmu-Mir-205-P4 Mun-Mir-205-P4 Neu-Mir-205-P4 Oan-Mir-205-P4 Ocu-Mir-205-P4 Pab-Mir-205-P4 Pbv-Mir-205-P4 Rno-Mir-205-P4 Sha-Mir-205-P4 Spt-Mir-205-P4 Sto-Mir-205-P4 Tgu-Mir-205-P4 Xtr-Mir-205-P4

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030727.1: 39955338-39955396 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGUUUAAAGAACGAUCCACGUGUCCUGCUGUCCUUCAUUCCACCGGAGUCUGUCUCAUACAUAAUCAGAUUUCAGUAGAGUGAAGCACAAGAGGCAUGUAGCAGUCUCAGCACAACCUG

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Structure

        10           20        30        40        50         
GGUUUAAAGAACGAUCC---|    U   GC   C        C  C        UCUCAU 
                    ACGUG CCU  UGU CUUCAUUC AC GGAGUCUG      \
                    UGUAC GGA  ACA GAAGUGAG UG CUUUAGAC      A
GUCCAACACGACUCUGACGA^    -   GA   C        A  A        UAAUAC 
       110       100         90        80        70        60

Deep sequencing

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Comment

There is a second Dicer cut +1 on the 5p arm.

3' NTU

Motifs

Tissue expression

Em

Mature sequence

Xla-Mir-205-P4d_5p

mirBase accession

MIMAT0011142

Sequence

0- UCCUUCAUUCCACCGGAGUCUG -22

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Star sequence

Xla-Mir-205-P4d_3p*

mirBase accession

None

Sequence

37- GAUUUCAGUAGAGUGAAGCACA -59

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