Mir-205-P4

MirGeneDB ID

Rno-Mir-205-P4

Family name

MIR-205 (all species)

Seed

CCUUCAU

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-205

Paralogues

Orthologues

Aca-Mir-205-P4 Ami-Mir-205-P4 Bta-Mir-205-P4 Cfa-Mir-205-P4 Cja-Mir-205-P4 Cli-Mir-205-P4 Cmi-Mir-205-P4 Cpi-Mir-205-P4 Cpo-Mir-205-P4 Dno-Mir-205-P4 Dre-Mir-205-P4a Eca-Mir-205-P4 Ete-Mir-205-P4 Gga-Mir-205-P4 Gja-Mir-205-P4 Gmo-Mir-205-P4a Gmo-Mir-205-P4b Hsa-Mir-205-P4 Laf-Mir-205-P4 Lch-Mir-205-P4 Loc-Mir-205-P4 Loc-Mir-205-P4-as Mal-Mir-205-P4a Mal-Mir-205-P4b Mdo-Mir-205-P4 Mml-Mir-205-P4 Mmr-Mir-205-P4 Mmu-Mir-205-P4 Mun-Mir-205-P4 Neu-Mir-205-P4 Oan-Mir-205-P4 Ocu-Mir-205-P4 Pab-Mir-205-P4 Pbv-Mir-205-P4 Sha-Mir-205-P4 Spt-Mir-205-P4 Sto-Mir-205-P4 Tgu-Mir-205-P4 Tni-Mir-205-P4a Xla-Mir-205-P4c Xla-Mir-205-P4d Xtr-Mir-205-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr13: 112233301-112233358 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACAGCCCCAGACAAUCCAUGGGUCCUCCUGUCCUUCAUUCCACCGGAGUCUGUCUUAUGCCAACCAGAUUUCAGUGGAGUGAAGCUCAGGAGGCAUGGAGCUGCCAGCGGUGGACUGA

Get precursor sequence

Structure

        10        20           30        40        50        
ACAGCCCCAGACAAUCCAUGG---|U       UC           C        UCUUA 
                        G CCUCCUG  CUUCAUUCCAC GGAGUCUG     U
                        C GGAGGAC  GAAGUGAGGUG CUUUAGAC     G
AGUCAGGUGGCGACCGUCGAGGUA^-       UC           A        CAACC 
      110       100         90        80        70        60

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut +1 on the 5p arm.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-205-P4_5p

mirBase accession

MIMAT0000878

Sequence

0- UCCUUCAUUCCACCGGAGUCUG -22

Get sequence

Proposed targets

microrna.org: MIMAT0000878
TargetScanVert: rno-miR-205
miRDB: MIMAT0000878

Star sequence

Rno-Mir-205-P4_3p*

mirBase accession

None

Sequence

36- GAUUUCAGUGGAGUGAAGCUCA -58

Get sequence