Mir-205-P4a

MirGeneDB ID

Dre-Mir-205-P4a

Family name

MIR-205 (all species)

Seed

CCUUCAU

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-205

Paralogues

Orthologues

Aca-Mir-205-P4 Ami-Mir-205-P4 Bta-Mir-205-P4 Cfa-Mir-205-P4 Cja-Mir-205-P4 Cli-Mir-205-P4 Cmi-Mir-205-P4 Cpi-Mir-205-P4 Cpo-Mir-205-P4 Dno-Mir-205-P4 Eca-Mir-205-P4 Ete-Mir-205-P4 Gga-Mir-205-P4 Gja-Mir-205-P4 Gmo-Mir-205-P4a Hsa-Mir-205-P4 Laf-Mir-205-P4 Lch-Mir-205-P4 Loc-Mir-205-P4 Loc-Mir-205-P4-as Mal-Mir-205-P4a Mdo-Mir-205-P4 Mml-Mir-205-P4 Mmr-Mir-205-P4 Mmu-Mir-205-P4 Mun-Mir-205-P4 Neu-Mir-205-P4 Oan-Mir-205-P4 Ocu-Mir-205-P4 Pab-Mir-205-P4 Pbv-Mir-205-P4 Rno-Mir-205-P4 Sha-Mir-205-P4 Spt-Mir-205-P4 Sto-Mir-205-P4 Tgu-Mir-205-P4 Tni-Mir-205-P4a Xtr-Mir-205-P4

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr23: 33290291-33290350 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGGAUGGCCUAAAACUACUGUGCAUUCUAUCCUUCAUUCCACCGGAGUCUGUGUAGUUGUUCAAUCAGAUUUCAGUGGUGUGAAGUGUAGGAAACACGGAAAGAUCGCAUCCCUUUCUG

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Structure

        10          20        30        40        50         
GUGGAUGGCCUAAAACUA--|    CA     UC      U    C        UGUAGU 
                    CUGUG  UUCUA  CUUCAU CCAC GGAGUCUG      U
                    GGCAC  AGGAU  GAAGUG GGUG CUUUAGAC      G
GUCUUUCCCUACGCUAGAAA^    AA     GU      U    A        UAACUU 
.       110       100        90        80        70        60

Deep sequencing

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Comment

There is a second Dicer cut +1 on the 5p arm.

3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-205-P4a_5p

mirBase accession

MIMAT0001280

Sequence

0- UCCUUCAUUCCACCGGAGUCUG -22

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Proposed targets

TargetScanFish: dre-miR-205

Star sequence

Dre-Mir-205-P4a_3p*

mirBase accession

MIMAT0031925

Sequence

38- GAUUUCAGUGGUGUGAAGUGUA -60

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