MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-205-P4a

Family name MIR-205 (all species)
Seed CCUUCAU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-205-1
Paralogues Gmo-Mir-205-P4b 
Orthologues Aca-Mir-205-P4  Ami-Mir-205-P4  Bta-Mir-205-P4  Cfa-Mir-205-P4  Cja-Mir-205-P4  Cli-Mir-205-P4  Cmi-Mir-205-P4  Cpi-Mir-205-P4  Cpo-Mir-205-P4  Dno-Mir-205-P4  Dre-Mir-205-P4a  Eca-Mir-205-P4  Ete-Mir-205-P4  Gga-Mir-205-P4  Gja-Mir-205-P4  Hsa-Mir-205-P4  Laf-Mir-205-P4  Lch-Mir-205-P4  Loc-Mir-205-P4  Loc-Mir-205-P4-as  Mal-Mir-205-P4a  Mdo-Mir-205-P4  Mml-Mir-205-P4  Mmr-Mir-205-P4  Mmu-Mir-205-P4  Mun-Mir-205-P4  Neu-Mir-205-P4  Oan-Mir-205-P4  Ocu-Mir-205-P4  Pab-Mir-205-P4  Pbv-Mir-205-P4  Rno-Mir-205-P4  Sha-Mir-205-P4  Spt-Mir-205-P4  Sto-Mir-205-P4  Tgu-Mir-205-P4  Tni-Mir-205-P4a  Xtr-Mir-205-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_1600: 405491-405549 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUGAGCGUCGGGGUAUAUCAUGUGUUCUAUCCUUCAUUCCACCGGAGUCUGUAUCCAUGGUAACCAGAUUUCAGUGGUGUGAAGAGUAAGAGGCAUGGGGUUGAACGUCCAAAACCGA
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Structure
        10          20        30        40        50         
GCUGAGCGUCGGGGUAUA--|     G UC  UC      U    C        UAUCCA 
                    UCAUGU U  UA  CUUCAU CCAC GGAGUCUG      \
                    GGUACG A  AU  GAAGUG GGUG CUUUAGAC      U
AGCCAAAACCUGCAAGUUGG^     G GA  GA      U    A        CAAUGG 
       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-205-P4a_5p
mirBase accessionMIMAT0044127
Sequence 
0- UCCUUCAUUCCACCGGAGUCUG -22
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Star sequence

Gmo-Mir-205-P4a_3p*
mirBase accessionMIMAT0044128
Sequence 
37- GAUUUCAGUGGUGUGAAGAGUA -59
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