| MirGeneDB ID | Sto-Mir-205-P1 |
|---|
| Family name |
MIR-205 (all species) |
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| Seed |
CCUUCAU |
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| Species |
Cloudy Catshark (Scyliorhinus torazame) |
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| MiRBase ID |
|
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| Paralogues |
Sto-Mir-205-P2
Sto-Mir-205-P4
|
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| Orthologues |
Cmi-Mir-205-P1
Lch-Mir-205-P1
Mal-Mir-205-P1-v1
Mal-Mir-205-P1-v2
Pma-Mir-205-o1
Xla-Mir-205-P1a
Xla-Mir-205-P1b
Xtr-Mir-205-P1
|
|---|
| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(GCA_003427355_STO_add) |
BFAA01000934.1: 396938-396999 [+]
|
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Precursor
(pre-Mir +30nt flank) |
ACAACAAGACAAGGAAGACACAUUCUGAUGUCCUUCAUUCCACCGGAGUCUGUGUCCAUCUCUGAUCCAGAUUCCCAGUGAGAUGAAGCGCAUGAGAUGCGUCCAUGAGCAACGGAAGCAUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACAACAAGACAAGGAAG---| A U G C UC C- UGUCCAU
AC CAU CU AUGU CUUCAU CAC GGAGUCUG \
UG GUA GA UACG GAAGUA GUG CCUUAGAC C
GUACGAAGGCAACGAGUACC^ C - G C GA AC CUAGUCU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | The 3' end of the 5p arm although templated appears to be monouridylated as it generates a 3 nt Dicer offset. There is a Dicer cut -1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Sto-Mir-205-P1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCCUUCAUUCCACCGGAGUCUG -22
Get sequence
|
|---|
| Star sequence |
Sto-Mir-205-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- GAUUCCCAGUGAGAUGAAGCGCA -62
Get sequence
|
|---|
