| MirGeneDB ID | Cpi-Mir-726 |
|---|
| Family name |
MIR-726 (all species) |
|---|
| Seed |
UCACUAC |
|---|
| Species |
Western painted turtle (Chrysemys picta bellii) |
|---|
| MiRBase ID |
cpi-mir-726
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Aca-Mir-726
Dre-Mir-726
Gga-Mir-726
Gja-Mir-726
Loc-Mir-726
Mal-Mir-726
Spt-Mir-726
Tgu-Mir-726
Tni-Mir-726
Xla-Mir-726-P1
Xla-Mir-726-P2
Xtr-Mir-726
|
|---|
| Node of Origin (locus) |
Osteichthyes
|
|---|
| Node of Origin (family) |
Osteichthyes
|
|---|
Genome context
(chrPic1) |
JH584439: 94889-94949 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CCUUGUCCCCCAUCUCUGGGGCGUUCACCAGGAAUUCCGCUAGUUCUGAACUAUUUACACUUGAAAAAAGUUCACUACUAGCAGAACUCGGGUGCGCGCCCCCCAACAUCGCAGUGGGGCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCUUGUCCCCCAUCUCU--| U AG A C UC AUUUACA
GGGGCGU CACC GA UUC GCUAGU UGAACU C
CCCCGCG GUGG CU AAG CGAUCA ACUUGA U
ACGGGGUGACGCUACAACC^ C G- C A UC AAAAAGU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Cpi-Mir-726_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GGAAUUCCGCUAGUUCUGAACUA -23
Get sequence
|
|---|
| Mature sequence |
Cpi-Mir-726_3p |
| mirBase accession | MIMAT0037907 |
|---|
| Sequence |
40- UUCACUACUAGCAGAACUCGG -61
Get sequence
|
|---|
