| MirGeneDB ID | Gja-Mir-726 |
|---|
| Family name |
MIR-726 (all species) |
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| Seed |
UCACUAC |
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| Species |
Schlegels Japanese gecko (Gekko japonicus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Aca-Mir-726
Cpi-Mir-726
Dre-Mir-726
Gga-Mir-726
Loc-Mir-726
Mal-Mir-726
Spt-Mir-726
Tgu-Mir-726
Tni-Mir-726
Xla-Mir-726-P1
Xla-Mir-726-P2
Xtr-Mir-726
|
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| Node of Origin (locus) |
Osteichthyes
|
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| Node of Origin (family) |
Osteichthyes
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Genome context
(GCF_001447785.1_Gekko_japonicus) |
NW_015160281.1: 327408-327468 [+]
|
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Precursor
(pre-Mir +30nt flank) |
CCCCUCCCCUCGCCUUCCGGGCUCUCGUCAGGAAUUCCGCUAGUUCUGAACUAUUUACAGUUGGAAAAAGUUCACUACUAGCAGAACUCGGCCGUGCGCCCCGUGCUCUUCGGGGGGGGGG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CCCCUCCCCUCGCCUUCC-- UCU -| AG A C UC AUUUACA
GGGC C GUC GA UUC GCUAGU UGAACU G
CCCG G CGG CU AAG CGAUCA ACUUGA U
GGGGGGGGGGCUUCUCGUGC CGU C^ -- C A UC AAAAGGU
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Gja-Mir-726_5p* |
| mirBase accession | None |
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| Sequence |
0- GGAAUUCCGCUAGUUCUGAACU -22
Get sequence
|
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| Mature sequence |
Gja-Mir-726_3p |
| mirBase accession | None |
|---|
| Sequence |
40- UUCACUACUAGCAGAACUCGG -61
Get sequence
|
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