| MirGeneDB ID | Xla-Mir-726-P1 |
|---|
| Family name |
MIR-726 (all species) |
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| Seed |
UCACUAC |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-726-P2
|
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| Orthologues |
Aca-Mir-726
Cpi-Mir-726
Dre-Mir-726
Gga-Mir-726
Gja-Mir-726
Loc-Mir-726
Mal-Mir-726
Spt-Mir-726
Tgu-Mir-726
Tni-Mir-726
Xtr-Mir-726
|
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
Osteichthyes
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NW_016694841.1: 180023-180087 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CGCCUGUCCUGUUCCUGUGGGUGCUUGUCAGGAAUUCCGCUAGUUCUGAACUAUUCCAUGUUAGUAAGUAAAAGUUCACUACUAGCAGAAUUCGGCCACGUACCACACUUGCUGCCCAAAGGACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CGCCUGUCCUGUUCCUG- - UU-| AG C UC AUUCCAUGU
UG GGUGC GUC GAAUUC GCUAGU UGAACU U
AC CCAUG CGG CUUAAG CGAUCA ACUUGA A
ACAGGAAACCCGUCGUUC A CAC^ -- A UC AAAUGAAUG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | The 3' end of the 3p arm is primarily monoadenylated rather than monouridylated. |
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| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Xla-Mir-726-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GGAAUUCCGCUAGUUCUGAACU -22
Get sequence
|
|---|
| Mature sequence |
Xla-Mir-726-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
44- UUCACUACUAGCAGAAUUCGG -65
Get sequence
|
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