| MirGeneDB ID | Cpo-Mir-350 |
|---|
| Family name |
MIR-350 (all species) |
|---|
| Seed |
UCACAAA |
|---|
| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-350
|
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| Paralogues |
|
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| Orthologues |
Cfa-Mir-350
Eca-Mir-350
Ete-Mir-350
Laf-Mir-350
Mmr-Mir-350
Mmu-Mir-350
Ocu-Mir-350
Rno-Mir-350-P1
Rno-Mir-350-P2
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
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Genome context
(cavPor3) |
scaffold_13: 10177799-10177859 [-]
UCSC
|
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Precursor
(pre-Mir +30nt flank) |
AAAAGCAAAACACCUUGCUCCUACAAGAGUAAAGUGCACGCGCUUUGGGACAGUGAGGAAAAUAAUGUUCACAAAGCCCAUACACUUUCACUCUUUAGGAGAGUUGCAGCUUCUUUUGGCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAAAGCAAAACACCUUG--- C - CACGC -| GUGAGG
CUCCUA AAGAGU AAAGUG GCUUUG GGACA \
GAGGAU UUCUCA UUUCAC CGAAAC CUUGU A
UCGGUUUUCUUCGACGUUGA - C AUACC A^ AAUAAA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
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| Star sequence |
Cpo-Mir-350_5p* |
| mirBase accession | MIMAT0047186 |
|---|
| Sequence |
0- AAAGUGCACGCGCUUUGGGACA -22
Get sequence
|
|---|
| Mature sequence |
Cpo-Mir-350_3p |
| mirBase accession | MIMAT0047187 |
|---|
| Sequence |
37- UUCACAAAGCCCAUACACUUUCAC -61
Get sequence
|
|---|
