MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-350-P1

Family name MIR-350 (all species)
Seed AAGUGCA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-350-1
Paralogues Rno-Mir-350-P2 
Orthologues Cfa-Mir-350  Cpo-Mir-350  Ete-Mir-350  Mmu-Mir-350  Ocu-Mir-350 
Node of Origin (locus) R. norvegicus
Node of Origin (family) Eutheria
Genome context
(rn6)
chr13: 43827515-43827574 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAUAGAUAGAUGCCUUGCUCCUACAAGAGUAAAGUGCACGUGCUUUGGGACAGUGAGGAAAAUAAUGUUCACAAAGCCCAUACACUUUCACCCUUUAGGAGAGUUGCAGCUUCCUUUACA
Get precursor sequence
Structure
        10          20        30         40         50         
GAUAGAUAGAUGCCUUG--      C   A  -      CACGU      -|    GUGAGG 
                   CUCCUA AAG GU AAAGUG     GCUUUG GGACA      \
                   GAGGAU UUC CA UUUCAC     CGAAAC CUUGU      A
ACAUUUCCUUCGACGUUGA      -   C  C      AUACC      A^    AAUAAA 
.       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-350-P1_5p

mirBase accessionNone
Sequence
0- AAAGUGCACGUGCUUUGGGACA -22
Get sequence
Co-mature sequence

Rno-Mir-350-P1_3p

mirBase accessionMIMAT0000604
Sequence
37- UUCACAAAGCCCAUACACUUUCA -60
Get sequence