| MirGeneDB ID | Rno-Mir-350-P1 |
|---|
| Family name |
MIR-350 (all species) |
|---|
| Seed |
AAGUGCA |
|---|
| Species |
Norway rat (Rattus norvegicus) |
|---|
| MiRBase ID |
rno-mir-350-1
|
|---|
| Paralogues |
Rno-Mir-350-P2
|
|---|
| Orthologues |
Cfa-Mir-350
Cpo-Mir-350
Eca-Mir-350
Ete-Mir-350
Laf-Mir-350
Mmr-Mir-350
Mmu-Mir-350
Ocu-Mir-350
|
|---|
| Node of Origin (locus) |
R. norvegicus
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(rn6) |
chr13: 43827515-43827575 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GAUAGAUAGAUGCCUUGCUCCUACAAGAGUAAAGUGCACGUGCUUUGGGACAGUGAGGAAAAUAAUGUUCACAAAGCCCAUACACUUUCACCCUUUAGGAGAGUUGCAGCUUCCUUUACAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAUAGAUAGAUGCCUUG--- C A - CACGU -| GUGAGG
CUCCUA AAG GU AAAGUG GCUUUG GGACA \
GAGGAU UUC CA UUUCAC CGAAAC CUUGU A
CACAUUUCCUUCGACGUUGA - C C AUACC A^ AAUAAA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
| Dr |
Dr |
Ad |
Bi |
Bi |
Bi |
Bi |
Br |
Br |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Co |
Co |
Co |
Co |
Du |
Du |
Du |
Du |
Fa |
He |
He |
He |
Hi |
Hi |
Il |
Il |
Je |
Je |
Ki |
Ki |
Ki |
Ki |
Ki |
La |
Li |
Li |
Li |
Li |
Li |
Li |
Lu |
Me |
Me |
Mu |
Ov |
Pa |
Pa |
Pa |
Sk |
Sm |
So |
So |
So |
So |
Sp |
St |
St |
St |
St |
Te |
Te |
Th |
Ut |
Wh |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Rno-Mir-350-P1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AAAGUGCACGUGCUUUGGGACA -22
Get sequence
|
|---|
| Co-mature sequence |
Rno-Mir-350-P1_3p |
| mirBase accession | MIMAT0000604 |
|---|
| Sequence |
37- UUCACAAAGCCCAUACACUUUCAC -61
Get sequence
|
|---|
