| MirGeneDB ID | Laf-Mir-350 |
|---|
| Family name |
MIR-350 (all species) |
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| Seed |
UCACAAA |
|---|
| Species |
African bush elephant (Loxodonta africana) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Cfa-Mir-350
Cpo-Mir-350
Eca-Mir-350
Ete-Mir-350
Mmr-Mir-350
Mmu-Mir-350
Ocu-Mir-350
Rno-Mir-350-P1
Rno-Mir-350-P2
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
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Genome context
(GCA_000001905.1_Loxafr3.0) |
GL010043.1: 42772407-42772465 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GAACCAAAAAAACUUUGCUCCUACAAGAGUAAAGUGCACGCGCUUUGGGACAGUGAGGAAAAUAUUGUUCACAAAGCCCAUACACUUUUACCCUUUAGGAGAGUUGCAGCUUCUUUUGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAACCAAAAAAACUUUG- C A - CACGC -| GUGAGG
CUCCUA AAG GU AAAGUG GCUUUG GGACA \
GAGGAU UUC CA UUUCAC CGAAAC CUUGU A
GGUUUUCUUCGACGUUGA - C U AUACC A^ UAUAAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Laf-Mir-350_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AAAGUGCACGCGCUUUGGGACA -22
Get sequence
|
|---|
| Mature sequence |
Laf-Mir-350_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UUCACAAAGCCCAUACACUUUU -59
Get sequence
|
|---|
