| MirGeneDB ID | Eca-Mir-350 |
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| Family name |
MIR-350 (all species) |
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| Seed |
UCACAAA |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
eca-mir-350
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| Paralogues |
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| Orthologues |
Cfa-Mir-350
Cpo-Mir-350
Ete-Mir-350
Laf-Mir-350
Mmr-Mir-350
Mmu-Mir-350
Ocu-Mir-350
Rno-Mir-350-P1
Rno-Mir-350-P2
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009177.1: 2087483-2087544 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAAACAAAAACCCUUUGCUCCUAUAAGAGUAAAGUGCACGCGCUUUGGGACAGUGAGGAAGAUGAUGUUCACAAAGCCCAUACACUUUUACUCUUUAGGAGAGCCACAGCUACUGACUUGGU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AAAACAAAAACCCUUUG---- U - CACGC -| GUGAGG
CUCCUA AAGAGU AAAGUG GCUUUG GGACA \
GAGGAU UUCUCA UUUCAC CGAAAC CUUGU A
UGGUUCAGUCAUCGACACCGA - U AUACC A^ AGUAGA
120 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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| Star sequence |
Eca-Mir-350_5p* |
| mirBase accession | None |
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| Sequence |
0- AAAGUGCACGCGCUUUGGGACA -22
Get sequence
|
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| Mature sequence |
Eca-Mir-350_3p |
| mirBase accession | MIMAT0013191 |
|---|
| Sequence |
37- UUCACAAAGCCCAUACACUUUUACU -62
Get sequence
|
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