MirGeneDB ID | Ocu-Mir-350 |
Family name |
MIR-350 (all species) |
Seed |
UCACAAA |
Species |
Rabbit (Oryctolagus cuniculus) |
MiRBase ID |
ocu-mir-350
|
Paralogues |
|
Orthologues |
Cfa-Mir-350
Cpo-Mir-350
Eca-Mir-350
Ete-Mir-350
Laf-Mir-350
Mmr-Mir-350
Mmu-Mir-350
Rno-Mir-350-P1
Rno-Mir-350-P2
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (oryCun2_add) |
chr16: 24307027-24307087 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAAACAAAAAAUAUUUGCUCCUACAAGAGUAAAGUGCAUGCGCUUUGGGACAGUGAGGAAAAUAAUGUUCACAAAGCCCAUACACUUUUACCCUUUGGGAGAGUUGCAGCUUCUUUUGGCA
Get precursor sequence
|
Structure | 10 20 30 40 50
AAAACAAAAAAUAUUUG--- C A - C C -| GUGAGG
CUCCUA AAG GU AAAGUG AUG GCUUUG GGACA \
GAGGGU UUC CA UUUCAC UAC CGAAAC CUUGU A
ACGGUUUUCUUCGACGUUGA - C U A C A^ AAUAAA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Ocu-Mir-350_5p* |
mirBase accession | MIMAT0048391 |
Sequence |
0- AAAGUGCAUGCGCUUUGGGACA -22
Get sequence
|
Mature sequence |
Ocu-Mir-350_3p |
mirBase accession | MIMAT0048392 |
Sequence |
37- UUCACAAAGCCCAUACACUUUUAC -61
Get sequence
|