MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-350

Family name MIR-350 (all species)
Seed UCACAAA
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-350
Paralogues
Orthologues Cfa-Mir-350  Cpo-Mir-350  Ete-Mir-350  Mmu-Mir-350  Rno-Mir-350-P1  Rno-Mir-350-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
chr16: 24307027-24307086 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAACAAAAAAUAUUUGCUCCUACAAGAGUAAAGUGCAUGCGCUUUGGGACAGUGAGGAAAAUAAUGUUCACAAAGCCCAUACACUUUUACCCUUUGGGAGAGUUGCAGCUUCUUUUGGC
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Structure
        10          20        30         40         50         
AAAACAAAAAAUAUUUG--      C   A  -      C   C      -|    GUGAGG 
                   CUCCUA AAG GU AAAGUG AUG GCUUUG GGACA      \
                   GAGGGU UUC CA UUUCAC UAC CGAAAC CUUGU      A
CGGUUUUCUUCGACGUUGA      -   C  U      A   C      A^    AAUAAA 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-350_5p*

mirBase accessionMIMAT0048391
Sequence
0- AAAGUGCAUGCGCUUUGGGACA -22
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Mature sequence

Ocu-Mir-350_3p

mirBase accessionMIMAT0048392
Sequence
37- UUCACAAAGCCCAUACACUUUUA -60
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