MirGeneDB ID | Cpo-Mir-483 |
Family name |
MIR-483 (all species) |
Seed |
AGACGGG |
Species |
Guinea pig (Cavia porcellus) |
MiRBase ID |
cpo-mir-483
|
Paralogues |
|
Orthologues |
Bta-Mir-483-v1
Bta-Mir-483-v2
Cfa-Mir-483
Cja-Mir-483
Dno-Mir-483
Eca-Mir-483-v1
Eca-Mir-483-v2
Ete-Mir-483
Hsa-Mir-483
Mml-Mir-483
Mmr-Mir-483
Mmu-Mir-483
Neu-Mir-483
Ocu-Mir-483
Pab-Mir-483
Rno-Mir-483
Sha-Mir-483
|
Node of Origin (locus) |
Theria
|
Node of Origin (family) |
Theria
|
Genome context (cavPor3) |
scaffold_42: 12421632-12421692 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
UCAGACCUGAGUGCCGUGGGGGAGAGGGGAAAGACGGGAGAAGAGAAGGGAGUGGUUAAUGCGACUCCUCACUCCUCCCCUCCCGUCUUGUUCUCUCCUGCCCAAUCCUCCCUGUCUCAAC
Get precursor sequence
|
Structure | 10 20 30 40 50
UCAGACCUGAGUGCCGU- --| GA AA A G UGGUUAA
GGG GGAGAGGG AAGACGGGAG GAG AG GAG \
CCC CCUCUCUU UUCUGCCCUC CUC UC CUC U
CAACUCUGUCCCUCCUAA GU^ G- CC C A CUCAGCG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
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Mature sequence |
Cpo-Mir-483_5p |
mirBase accession | MIMAT0047273 |
Sequence |
0- AAGACGGGAGAAGAGAAGGGAG -22
Get sequence
|
Co-mature sequence |
Cpo-Mir-483_3p |
mirBase accession | MIMAT0047274 |
Sequence |
39- CACUCCUCCCCUCCCGUCUUGU -61
Get sequence
|