MirGeneDB ID | Dan-Mir-971 |
Family name |
MIR-971 (all species) |
Seed |
UGGUGUU |
Species |
Fruit fly (Drosophila ananassae) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aae-Mir-971
Aga-Mir-971
Bge-Mir-971-v1
Bge-Mir-971-v2
Dlo-Mir-971
Dme-Mir-971
Dmo-Mir-971
Dsi-Mir-971
Dya-Mir-971
Gpa-Mir-971
Hme-Mir-971
Tca-Mir-971
|
Node of Origin (locus) |
Neoptera
|
Node of Origin (family) |
Neoptera
|
Genome context (Dana_caf1) |
scaffold_13117: 3891818-3891881 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGUGAGAAAAUUCCGUGGCUGGCAUCGUUCACUGUAAAUUGUAACCAUCAAAGCGUUUUUUAUCAGAGCCGCUUGGUGUUACUUCUUACAGUGAGUGAGCCAGCUGGAGCACAUAUUAAAAAAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGUGAGAAAAUUCCGUG---| A AUU C A GUUUUUU
GCUGGC UCGUUCACUGUAA GUAAC AUCAA GC A
CGACCG AGUGAGUGACAUU CAUUG UGGUU CG U
AAAAAAAUUAUACACGAGGU^ - CUU - - CCGAGAC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Dan-Mir-971_5p* |
mirBase accession | None |
Sequence |
0- ACUGUAAAUUGUAACCAUCAAAGC -24
Get sequence
|
Mature sequence |
Dan-Mir-971_3p |
mirBase accession | None |
Sequence |
42- UUGGUGUUACUUCUUACAGUGA -64
Get sequence
|