MirGeneDB 3.0

MirGeneDB ID

Gpa-Mir-971

Family name MIR-971 (all species)
Seed UGGUGUU
Species Tsetse fly (Glossina pallidipes)
MiRBase ID
Paralogues
Orthologues Aae-Mir-971  Aga-Mir-971  Bge-Mir-971-v1  Bge-Mir-971-v2  Dan-Mir-971  Dlo-Mir-971  Dme-Mir-971  Dmo-Mir-971  Dsi-Mir-971  Dya-Mir-971  Hme-Mir-971  Tca-Mir-971 
Node of Origin (locus) Neoptera
Node of Origin (family) Neoptera
Genome context
(GpalI1)
Scaffold16: 347672-347733 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUUAAUCGCACCAUAAUAACUUUGUUAUUCGCUGUAAGAUGGUAACAACAAAGCUGAGUUAUGUUAUUGCUUGGUGUUACUUCUUACAGUGAUUGCCAAAGUACAAUAACCUCAACUUUUUC
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Structure
        10          20        30        40        50        60 
AUUAAUCGCACCAUAAUA--|     U  U           U       ACA    UGAGUU 
                    ACUUUG UA UCGCUGUAAGA GGUAACA   AAGC      A
                    UGAAAC GU AGUGACAUUCU UCAUUGU   UUCG      U
CUUUUUCAACUCCAAUAACA^     C  U           -       GG-    UUAUUG 
120       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Gpa-Mir-971_5p*

mirBase accessionNone
Sequence
0- GCUGUAAGAUGGUAACAACAAAGC -24
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Mature sequence

Gpa-Mir-971_3p

mirBase accessionNone
Sequence
40- UUGGUGUUACUUCUUACAGUGA -62
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