MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-203-P1-v1

Family name MIR-203 (all species)
Seed UGAAAUG
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-203b
Paralogues Dre-Mir-203-P1-v2  Dre-Mir-203-P2-v1  Dre-Mir-203-P2-v2 
Orthologues Gmo-Mir-203-P1-v1  Gmo-Mir-203-P1-v2  Lch-Mir-203  Mal-Mir-203-P1-v1  Mal-Mir-203-P1-v2  Pma-Mir-203-o1  Spt-Mir-203 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr20: 27405891-27405949 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-203-P1-v1)		 Mir-203-P1-v1 chr20: 27405891-27405949 [+] UCSC Ensembl
Mir-203-P1-v2 chr20: 27405891-27405949 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACUUAACAUGUGGCUUCCUCUUUGGCCGAGUGGUUCUCAACAGUUCAACAGUUCUUUUGAUGAUUGUGAAAUGUUCAGGACCACUUGAUCAGACGAAGGACAAUUUCACCUCUGAAA
Get precursor sequence
Structure
        10        20          30        40        50         
CCACUUAACAUGUGGCUU  -  -|   GC           C    G    A   UUCUU 
                  CC UC UUUG  CGAGUGGUUCU AACA UUCA CAG     U
                  GG AG AGAC  GUUCACCAGGA UUGU AAGU GUU     U
AAAGUCUCCACUUUAACA  A  C^   UA           C    A    -   AGUAG 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-203-P1-v1_5p*
mirBase accessionMIMAT0003407
Sequence 
0- AGUGGUUCUCAACAGUUCAACAG -23
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Mature sequence

Dre-Mir-203-P1-v1_3p
mirBase accessionMIMAT0001865
Sequence 
37- GUGAAAUGUUCAGGACCACUUG -59
Get sequence
Proposed targets TargetScanFish: dre-miR-203b