MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-203-P1-v1

Family name MIR-203 (all species)
Seed UGAAAUG
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-203a
Paralogues Gmo-Mir-203-P1-v2  Gmo-Mir-203-P2-v1  Gmo-Mir-203-P2-v2 
Orthologues Dre-Mir-203-P1-v1  Dre-Mir-203-P1-v2  Lch-Mir-203  Mal-Mir-203-P1-v1  Mal-Mir-203-P1-v2  Pma-Mir-203-o1  Spt-Mir-203 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_2769: 7537-7595 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-203-P1-v1)
Mir-203-P1-v2 GeneScaffold_2769: 7536-7596 [-] UCSC Ensembl
Mir-203-P1-v1 GeneScaffold_2769: 7537-7595 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCCCGGAACUGAAACGCUCUCUUUGGUCUAGUGGUUCUCAAUAGUUCAACAGUCUUUCUUGAUUUUGUGAAAUGUUUAGGACCACUUGACCACUGAGCAGGAGAUCUCUGCCACACCC
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Structure
        10          20        30        40        50         
AUCCCGGAACUGAAACG-  -|  UU     U         C    G    A  GUCUUU 
                  CU CUC  UGGUC AGUGGUUCU AAUA UUCA CA      C
                  GA GAG  ACCAG UCACCAGGA UUGU AAGU GU      U
CCCACACCGUCUCUAGAG  C^  UC     U         U    A    -  UUUAGU 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-203-P1-v1_5p*

mirBase accessionMIMAT0044205
Sequence
0- AGUGGUUCUCAAUAGUUCAACA -22
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Mature sequence

Gmo-Mir-203-P1-v1_3p

mirBase accessionMIMAT0044206
Sequence
37- GUGAAAUGUUUAGGACCACUUG -59
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