MirGeneDB ID | Mal-Mir-203-P1-v2 |
Family name |
MIR-203 (all species) |
Seed |
GAAAUGU |
Species |
Asian swamp eel (Monopterus albus) |
MiRBase ID |
|
Paralogues |
Mal-Mir-203-P1-v1
Mal-Mir-203-P2-v1
Mal-Mir-203-P2-v2
|
Orthologues |
Dre-Mir-203-P1-v1
Dre-Mir-203-P1-v2
Gmo-Mir-203-P1-v1
Gmo-Mir-203-P1-v2
Lch-Mir-203
Pma-Mir-203-o1
Spt-Mir-203
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_001952655.1_M_albus_1.0_genomic) |
KV885305.1: 49123-49185 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCCGGUAGACGCAACUGAUCCUCUUUGGUCCAGUGGUUCUAGACAGUUCAACAGUAGUGAGUCCACCUUUGUGAAAUGUUUAGGACCACUUGAUCAGAGCGAAGGAACUGGCAUCUGGGAAGC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCCGGUAGACGCAACUGAU ---| C G A GUAGUGA
CCU CUUUGGUC AGUGGUUCUAGACA UUCA CA G
GGA GAGACUAG UCACCAGGAUUUGU AAGU GU U
CGAAGGGUCUACGGUCAA- AGC^ U A - UUCCACC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Mal-Mir-203-P1-v2_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CAGUGGUUCUAGACAGUUCAACA -23
Get sequence
|
Mature sequence |
Mal-Mir-203-P1-v2_3p |
mirBase accession | None |
Sequence |
41- UGAAAUGUUUAGGACCACUUGA -63
Get sequence
|