MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-203-P2-v2

Family name MIR-203 (all species)
Seed GAAAUGU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-203b
Paralogues Gmo-Mir-203-P1-v1  Gmo-Mir-203-P1-v2  Gmo-Mir-203-P2-v1 
Orthologues Dre-Mir-203-P2-v1  Dre-Mir-203-P2-v2  Lch-Mir-203  Mal-Mir-203-P2-v1  Mal-Mir-203-P2-v2  Pma-Mir-203-o2-v1  Pma-Mir-203-o2-v2  Spt-Mir-203  Tni-Mir-203-P2-v1  Tni-Mir-203-P2-v2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_2004: 40680-40741 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-203-P2-v2)
Mir-203-P2-v2 GeneScaffold_2004: 40680-40741 [+] UCSC Ensembl
Mir-203-P2-v1 GeneScaffold_2004: 40681-40740 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACUAAGAAGAUUCUGGAGUCUUGUUGAUUAAGUGGUUCUUAACAGUUCAACAGUUCAUUUCCAAAAUUGUGAAAUGUUUAGGACCACUUAACCAAUCAGACAAUUGCUUCGAGUAAUAGCU
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Structure
        10          20        30        40        50        60 
CACUAAGAAGAUUCUGGA--|   U    A            U    G    A  GUUCAUU 
                    GUCU GUUG UUAAGUGGUUCU AACA UUCA CA       \
                    CAGA UAAC AAUUCACCAGGA UUGU AAGU GU       U
UCGAUAAUGAGCUUCGUUAA^   C    C            U    A    -  UAAAACC 
120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-203-P2-v2_5p*

mirBase accessionMIMAT0044162
Sequence
0- AAGUGGUUCUUAACAGUUCAACA -23
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Mature sequence

Gmo-Mir-203-P2-v2_3p

mirBase accessionMIMAT0044163
Sequence
40- UGAAAUGUUUAGGACCACUUAA -62
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