MirGeneDB ID | Dya-Mir-999 |
Family name |
MIR-999 (all species) |
Seed |
GUUAACU |
Species |
Fruit fly (Drosophila yakuba) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aae-Mir-999
Aga-Mir-999
Dan-Mir-999
Dme-Mir-999
Dmo-Mir-999
Dsi-Mir-999
Gpa-Mir-999
|
Node of Origin (locus) |
Diptera
|
Node of Origin (family) |
Diptera
|
Genome context (Drosophila_yakuba.dyak_caf1.dna.toplevel) |
3R: 18443963-18444022 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAGAAGAAAGGAUGCCGCUCAAUUACCCCGACAUAGUCAUACGGUGAAUGUUGUGUAUUGGAGACCAAUGUUAACUGUAAGACUGUGUCUCGGUGGUUGCCAGCCACACCAGCCACAUCA
Get precursor sequence
|
Structure | 10 20 30 40 50
GAGAAGAAAGGAUGCCGCU--| CC A G GUGUAU
CAAUUACC GACAUAGUC UACGGU AAUGUU U
GUUGGUGG CUGUGUCAG AUGUCA UUGUAA G
ACUACACCGACCACACCGACC^ CU A A CCAGAG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Dya-Mir-999_5p* |
mirBase accession | None |
Sequence |
0- ACAUAGUCAUACGGUGAAUGUU -22
Get sequence
|
Mature sequence |
Dya-Mir-999_3p |
mirBase accession | None |
Sequence |
38- UGUUAACUGUAAGACUGUGUCU -60
Get sequence
|