| MirGeneDB ID | Gpa-Mir-999 |
|---|
| Family name |
MIR-999 (all species) |
|---|
| Seed |
GUUAACU |
|---|
| Species |
Tsetse fly (Glossina pallidipes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Aae-Mir-999
Aga-Mir-999
Dan-Mir-999
Dme-Mir-999
Dmo-Mir-999
Dsi-Mir-999
Dya-Mir-999
|
|---|
| Node of Origin (locus) |
Diptera
|
|---|
| Node of Origin (family) |
Diptera
|
|---|
Genome context
(GpalI1) |
Scaffold168: 823176-823236 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GGAAAUGACAUUAUAAGCUCAUCUACUGUGACAUAGUCGUACAGAAAAUAUUGUGUUAUACGAGUCCAAUGUUAACUGUAAGACUGUGUCUUGGUGGCUUGAAAUAAACUUCGACACAAUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGAAAUGACAUUAUAAGC- U-| U G AA GUGUUAU
UCA CUACUG GACAUAGUC UACAG AAUAUU \
AGU GGUGGU CUGUGUCAG AUGUC UUGUAA A
GUAACACAGCUUCAAAUAA UC^ U A AA CCUGAGC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
| Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Gpa-Mir-999_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACAUAGUCGUACAGAAAAUAUU -22
Get sequence
|
|---|
| Mature sequence |
Gpa-Mir-999_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UGUUAACUGUAAGACUGUGUCU -61
Get sequence
|
|---|
