MirGeneDB 3.0

MirGeneDB ID

Eca-Mir-574

Family name MIR-574 (all species)
Seed ACGCUCA
Species Horse (Equus caballus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-574  Cfa-Mir-574  Cja-Mir-574  Cpo-Mir-574  Dno-Mir-574  Ete-Mir-574  Hsa-Mir-574  Laf-Mir-574  Mml-Mir-574  Mmr-Mir-574  Mmu-Mir-574  Ocu-Mir-574  Pab-Mir-574 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)
CM009150.1: 90484145-90484202 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCCGAGGGCCCUGCGUGGGUGCGGGCGUGUGAGUGUGUGUGUGUGAGUGUGUGUCGCUCCGGGUCCACGCUCAUGCACACACCCACACGCCCGCACUCCGGGUCUGCCCCCUCGGCC
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Structure
        10          20        30        40        50         
GGCCGAGGGCCCUGCGU-  -|            AGU                 UGUCGC 
                  GG GUGCGGGCGUGUG   GUGUGUGUGUGAGUGUG      U
                  CC CACGCCCGCACAC   CACACACGUACUCGCAC      C
CCGGCUCCCCCGUCUGGG  U^            C--                 CUGGGC 
      110       100        90          80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-574_5p*

mirBase accessionNone
Sequence
0- UGAGUGUGUGUGUGUGAGUGUGUG -24
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Mature sequence

Eca-Mir-574_3p

mirBase accessionNone
Sequence
36- CACGCUCAUGCACACACCCACA -58
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