MirGeneDB ID | Laf-Mir-574 |
---|---|
Family name | MIR-574 (all species) |
Seed | GAGUGUG |
Species | African bush elephant (Loxodonta africana) |
MiRBase ID | |
Paralogues | |
Orthologues | Bta-Mir-574 Cfa-Mir-574 Cja-Mir-574 Cpo-Mir-574 Dno-Mir-574 Eca-Mir-574 Ete-Mir-574 Hsa-Mir-574 Mml-Mir-574 Mmr-Mir-574 Mmu-Mir-574 Ocu-Mir-574 Pab-Mir-574 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010128.1: 279587-279650 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CCUUGGGUUUAAAUGUGUUUCCAUGGGAGGUGAGUGUGUGUGUGUGAGUGUGUGUGUGUCUUAAGCGCAAUUGGGCAACGCACAAGCACUUCCCACAUAUCUCACUCCCCUCUGGGGAACUACUGet precursor sequence |
Structure | 10 20 30 40 50 CCUUGGGUUUAAAUGUGUUUCCA------ AG -| G GUGUGUGUGUG UGGGAGGUG UGUGUG UGU UGA \ ACCCUUCAC ACACGC ACG GUU U UCAUCAAGGGGUCUCCCCUCACUCUAUAC GA A^ G AACGCGAAUUC 120 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UGUG in loop |
Mature sequence | Laf-Mir-574_5p |
mirBase accession | None |
Sequence |
0- UGAGUGUGUGUGUGUGAGUGUGUG -24
Get sequence
|
Star sequence | Laf-Mir-574_3p* (predicted) |
mirBase accession | None |
Sequence |
41- UGGGCAACGCACAAGCACUUCCC -64
Get sequence
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