MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-574

Family name MIR-574 (all species)
Seed ACGCUCA
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Bta-Mir-574  Cfa-Mir-574  Cja-Mir-574  Cpo-Mir-574  Dno-Mir-574  Eca-Mir-574  Ete-Mir-574  Hsa-Mir-574  Laf-Mir-574  Mml-Mir-574  Mmr-Mir-574  Mmu-Mir-574  Ocu-Mir-574 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054682.2: 38218608-38218665 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCCGAGGGCCCUGCGUGGGUGCGGGCGUGUGAGUGUGUGUGUGUGAGUGUGUGUCGCUCUGGGUCCACGCUCAUGCACACACCCACACGCCCACACUCAGGGUCUGCCCCCUCGGCC
Get precursor sequence
Structure
        10          20        30        40        50         
GGCCGAGGGCCCUGCGU--|    C         AGU                 UGUCGC 
                   GGGUG GGGCGUGUG   GUGUGUGUGUGAGUGUG      U
                   CUCAC CCCGCACAC   CACACACGUACUCGCAC      C
CCGGCUCCCCCGUCUGGGA^    A         C--                 CUGGGU 
      110       100        90          80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Br Li Li
Star sequence

Pab-Mir-574_5p* (predicted)

mirBase accessionNone
Sequence
0- UGAGUGUGUGUGUGUGAGUGUGUG -24
Get sequence
Mature sequence

Pab-Mir-574_3p

mirBase accessionNone
Sequence
36- CACGCUCAUGCACACACCCACA -58
Get sequence