| MirGeneDB ID | Pab-Mir-574 |
|---|---|
| Family name | MIR-574 (all species) |
| Seed | ACGCUCA |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-574 Cfa-Mir-574 Cja-Mir-574 Cpo-Mir-574 Dno-Mir-574 Eca-Mir-574 Ete-Mir-574 Hsa-Mir-574 Laf-Mir-574 Mml-Mir-574 Mmr-Mir-574 Mmu-Mir-574 Ocu-Mir-574 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054682.2: 38218608-38218665 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GGCCGAGGGCCCUGCGUGGGUGCGGGCGUGUGAGUGUGUGUGUGUGAGUGUGUGUCGCUCUGGGUCCACGCUCAUGCACACACCCACACGCCCACACUCAGGGUCUGCCCCCUCGGCCGet precursor sequence |
| Structure | 10 20 30 40 50 GGCCGAGGGCCCUGCGU--| C AGU UGUCGC GGGUG GGGCGUGUG GUGUGUGUGUGAGUGUG U CUCAC CCCGCACAC CACACACGUACUCGCAC C CCGGCUCCCCCGUCUGGGA^ A C-- CUGGGU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Pab-Mir-574_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- UGAGUGUGUGUGUGUGAGUGUGUG -24
Get sequence
|
| Mature sequence | Pab-Mir-574_3p |
| mirBase accession | None |
| Sequence |
36- CACGCUCAUGCACACACCCACA -58
Get sequence
|
