MirGeneDB ID | Eca-Mir-744 |
Family name |
MIR-744 (all species) |
Seed |
GCGGGGC |
Species |
Horse (Equus caballus) |
MiRBase ID |
eca-mir-744
|
Paralogues |
|
Orthologues |
Bta-Mir-744
Cfa-Mir-744
Cja-Mir-744
Cpo-Mir-744
Dno-Mir-744
Ete-Mir-744
Hsa-Mir-744
Laf-Mir-744
Mml-Mir-744
Mmr-Mir-744
Mmu-Mir-744
Ocu-Mir-744
Pab-Mir-744
Rno-Mir-744
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_002863925.1_EquCab3.0) |
CM009158.1: 54752364-54752441 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGAAGAGGCAGCGCACUGGGUUGGGCAAGGUGCGGGGCUAGGGCUAACAGCAGUCUUACUGAAGGUUUCCUGGAAACCACGCACAUGCUGUUGCCACUAACCUCAACCUUACUCGGUCCUGACCGGCUCGGCUUCUGU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGAAGAGGCAGCGCACU--| GU C GC C - U GUCUUACUGAAGGUUU
GG UGGG AAGGU GGGG UAG GGC AACAGCA \
CC GCUC UUCCA CUCC AUC CCG UUGUCGU C
UGUCUUCGGCUCGGCCAGU^ UG A A- A A - ACACGCACCAAAGGUC
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | Although the 3' uridine is templated the 3' DcRNA reads when present suggest that this is a Group 2 miRNA. |
3' NTU |
Yes
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Eca-Mir-744_5p |
mirBase accession | MIMAT0034644 |
Sequence |
0- UGCGGGGCUAGGGCUAACAGCA -22
Get sequence
|
Star sequence |
Eca-Mir-744_3p* |
mirBase accession | None |
Sequence |
57- CUGUUGCCACUAACCUCAACC -78
Get sequence
|