MirGeneDB 3.0

MirGeneDB ID

Eca-Mir-744

Family name MIR-744 (all species)
Seed GCGGGGC
Species Horse (Equus caballus)
MiRBase ID eca-mir-744
Paralogues
Orthologues Bta-Mir-744  Cfa-Mir-744  Cja-Mir-744  Cpo-Mir-744  Dno-Mir-744  Ete-Mir-744  Hsa-Mir-744  Laf-Mir-744  Mml-Mir-744  Mmr-Mir-744  Mmu-Mir-744  Ocu-Mir-744  Pab-Mir-744  Rno-Mir-744 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)
CM009158.1: 54752364-54752441 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAAGAGGCAGCGCACUGGGUUGGGCAAGGUGCGGGGCUAGGGCUAACAGCAGUCUUACUGAAGGUUUCCUGGAAACCACGCACAUGCUGUUGCCACUAACCUCAACCUUACUCGGUCCUGACCGGCUCGGCUUCUGU
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Structure
        10          20        30        40         50        60         
AGAAGAGGCAGCGCACU--| GU    C     GC    C   -   U       GUCUUACUGAAGGUUU 
                   GG  UGGG AAGGU  GGGG UAG GGC AACAGCA                \
                   CC  GCUC UUCCA  CUCC AUC CCG UUGUCGU                C
UGUCUUCGGCUCGGCCAGU^ UG    A     A-    A   A   -       ACACGCACCAAAGGUC 
      130       120       110        100         90        80        70
Deep sequencing
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CommentAlthough the 3' uridine is templated the 3' DcRNA reads when present suggest that this is a Group 2 miRNA.
3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-744_5p

mirBase accessionMIMAT0034644
Sequence
0- UGCGGGGCUAGGGCUAACAGCA -22
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Star sequence

Eca-Mir-744_3p*

mirBase accessionNone
Sequence
57- CUGUUGCCACUAACCUCAACC -78
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