MirGeneDB ID | Pab-Mir-744 |
Family name |
MIR-744 (all species) |
Seed |
GCGGGGC |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
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Paralogues |
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Orthologues |
Bta-Mir-744
Cfa-Mir-744
Cja-Mir-744
Cpo-Mir-744
Dno-Mir-744
Eca-Mir-744
Ete-Mir-744
Hsa-Mir-744
Laf-Mir-744
Mml-Mir-744
Mmr-Mir-744
Mmu-Mir-744
Ocu-Mir-744
Rno-Mir-744
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054698.2: 12068345-12068422 [+]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
AGAAGACGCAGCACACUGGGUUGGGCAAGGUGCGGGGCUAGGGCUAACAGCAGUCUUACUGAAGGUUUCCUGGAAACCACGCACAUGCUGUUGCCACUAACCUCAACCUUACUCGGUCCUGACCGGCUCGGCUUCUGU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGAAGACGCAGCACACU--| GU C GC C - U GUCUUACUGAAGGUUU
GG UGGG AAGGU GGGG UAG GGC AACAGCA \
CC GCUC UUCCA CUCC AUC CCG UUGUCGU C
UGUCUUCGGCUCGGCCAGU^ UG A A- A A - ACACGCACCAAAGGUC
130 120 110 100 90 80 70 |
Deep sequencing |
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|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
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Mature sequence |
Pab-Mir-744_5p |
mirBase accession | None |
Sequence |
0- UGCGGGGCUAGGGCUAACAGCA -22
Get sequence
|
Star sequence |
Pab-Mir-744_3p* (predicted) |
mirBase accession | None |
Sequence |
57- CUGUUGCCACUAACCUCAACC -78
Get sequence
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