MirGeneDB ID | Efe-Mir-1997-P4 |
---|---|
Family name | MIR-1997 (all species) |
Seed | GGCUGAU |
Species | Common brandling worm (Eisenia fetida) |
MiRBase ID | |
Paralogues | Efe-Mir-1997-P1 Efe-Mir-1997-P2 Efe-Mir-1997-P3 Efe-Mir-1997-P5 |
Orthologues | Cte-Mir-1997 Dgr-Mir-1997 Pdu-Mir-1997 Snu-Mir-1997 |
Node of Origin (locus) | E. fetida |
Node of Origin (family) | Sipuncula + Pleistoannelida |
Genome context (Efe_combined) |
|
Precursor (pre-Mir +30nt flank) | CGGCUGAUGAAACUUACAAAGUUGUCGUUCUGAUAUGGACUCUGCAGGUUUUAUCAGCCCUAGet precursor sequence |
Structure | 10 20 C-- A A ---| GU GGCUGAUGAAACUU CA AGUU GUC \ CCGACUAUUUUGGA GU UCAG UAG U AUC C C GUA^ UC 60 50 40 30 |
Deep sequencing | |
3' NTU | No |
Motifs | No |
Mature sequence | Efe-Mir-1997-P4_5p |
mirBase accession | None |
Sequence |
0- CGGCUGAUGAAACUUACAAAGU -22
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|
Star sequence | Efe-Mir-1997-P4_3p* |
mirBase accession | None |
Sequence |
40- UCUGCAGGUUUUAUCAGCCCUA -62
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|