MirGeneDB 3.0

MirGeneDB ID

Efe-Mir-1997-P4

Family name MIR-1997 (all species)
Seed GGCUGAU
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-1997-P1  Efe-Mir-1997-P2  Efe-Mir-1997-P3  Efe-Mir-1997-P5 
Orthologues Cte-Mir-1997  Dgr-Mir-1997  Pdu-Mir-1997  Snu-Mir-1997 
Node of Origin (locus) E. fetida
Node of Origin (family) Sipuncula + Pleistoannelida
Genome context
(Efe_combined)
Precursor
(pre-Mir +30nt flank)
CGGCUGAUGAAACUUACAAAGUUGUCGUUCUGAUAUGGACUCUGCAGGUUUUAUCAGCCCUA
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Structure
          10        20            
C--              A  A    ---|  GU 
   GGCUGAUGAAACUU CA AGUU   GUC  \
   CCGACUAUUUUGGA GU UCAG   UAG  U
AUC              C  C    GUA^  UC 
 60        50        40        30
Deep sequencing
3' NTU No
MotifsNo
Mature sequence

Efe-Mir-1997-P4_5p

mirBase accessionNone
Sequence
0- CGGCUGAUGAAACUUACAAAGU -22
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Star sequence

Efe-Mir-1997-P4_3p*

mirBase accessionNone
Sequence
40- UCUGCAGGUUUUAUCAGCCCUA -62
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