MirGeneDB 3.0
MirGeneDB ID

Cte-Mir-1997

Family name MIR-1997 (all species)
Seed CUGCAGG
Species Polychaete worm (Capitella teleta)
MiRBase ID cte-mir-1997
Paralogues
Orthologues Dgr-Mir-1997  Efe-Mir-1997-P1  Efe-Mir-1997-P2  Efe-Mir-1997-P3  Efe-Mir-1997-P4  Efe-Mir-1997-P5  Pdu-Mir-1997  Snu-Mir-1997 
Node of Origin (locus) Sipuncula + Pleistoannelida
Node of Origin (family) Sipuncula + Pleistoannelida
Genome context
(Capitella_teleta_v1.0)		 CAPTEscaffold_20: 24860-24918 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GCUGCCCUUGUCGUCAUGCGCGGCUCCGUUGGGUUGGUGGGACCUCCAGCGUCAGUUGACCAGAACUCUGCAGGUUCACAUCAGCCCCAUGGGGUCGCUGCCUUUUCAUCACCAUGGCG
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Structure
        10          20        30         40        50        
GCUGCCCUUGUCGUCAU-  -          U         -|     C   C  CAGUU 
                  GC GCGGCUCCGU GGGUUGGUG GGACCU CAG GU     G
                  CG CGCUGGGGUA CCCGACUAC CUUGGA GUC CA     A
GCGGUACCACUACUUUUC  U          C         A^     C   U  AGACC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ea Fe Fe La La Ma Ma To
Star sequence

Cte-Mir-1997_5p*
mirBase accessionNone
Sequence 
0- GGGUUGGUGGGACCUCCAGCGU -22
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Mature sequence

Cte-Mir-1997_3p
mirBase accessionMIMAT0009708
Sequence 
36- UCUGCAGGUUCACAUCAGCCCCA -59
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