| MirGeneDB ID | Pdu-Mir-1997 |
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| Family name |
MIR-1997 (all species) |
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| Seed |
CUGCAGG |
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| Species |
Dumerils clam worm (Platynereis dumerilii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Cte-Mir-1997
Dgr-Mir-1997
Efe-Mir-1997-P1
Efe-Mir-1997-P2
Efe-Mir-1997-P3
Efe-Mir-1997-P4
Efe-Mir-1997-P5
Snu-Mir-1997
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| Node of Origin (locus) |
Sipuncula + Pleistoannelida
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| Node of Origin (family) |
Sipuncula + Pleistoannelida
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Genome context
(GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000004.1: 4379291-4379348 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUUCUACAAGGAAUGUUUGGUGACUAGGUAGGGCGAUGGGUUCUCGCAGGGUGAGAUAAAACUAUUCUGCAGGUUCACAUCAGCCCCACCUAGUGCUGAAAUUCUGCGUAACAAGGAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AUUCUACAAGGAAUGUUU--- G A - -| UU C UGAGAU
GGU ACUAGGU GGGC GAUG GG CU GCAGGG \
UCG UGAUCCA CCCG CUAC CU GA CGUCUU A
CAGGAACAAUGCGUCUUAAAG - C A A^ UG - AUCAAA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| 24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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| Star sequence |
Pdu-Mir-1997_5p* |
| mirBase accession | None |
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| Sequence |
0- GGGCGAUGGGUUCUCGCAGGGU -22
Get sequence
|
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| Mature sequence |
Pdu-Mir-1997_3p |
| mirBase accession | None |
|---|
| Sequence |
35- UCUGCAGGUUCACAUCAGCCCCA -58
Get sequence
|
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