MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-1997-P5

Family name MIR-1997 (all species)
Seed CUGCAGG
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-1997-P1  Efe-Mir-1997-P2  Efe-Mir-1997-P3  Efe-Mir-1997-P4 
Orthologues Cte-Mir-1997  Dgr-Mir-1997  Pdu-Mir-1997  Snu-Mir-1997 
Node of Origin (locus) E. fetida
Node of Origin (family) Sipuncula + Pleistoannelida
Genome context
(Efe_combined)		 Efet.01.1572519: 86-149 [-]
Precursor
(pre-Mir +30nt flank)
GACUAUCUCUGGUUUGCGGAUGACUCCGUUUGGUUGAUGGUUCUCGCAAAGUGUCUGAUUACAGUACGCACUCUGCAGGUUCACAUCAGCCAUACGGAUCGCCCGGUGACGUCACAGUACGAUU
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Structure
        10           20        30        40         50        60 
GACUAUCUCUGGUUUGC---| A   C     U         GUU- UC   A   GUCUGAUU 
                    GG UGA UCCGU UGGUUGAUG    C  GCA AGU        \
                    CC GCU AGGCA ACCGACUAC    G  CGU UCA        A
UUAGCAUGACACUGCAGUGG^ C   -     U         ACUU GA   C   CGCAUGAC 
  120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Efe-Mir-1997-P5_5p*
mirBase accessionNone
Sequence 
0- UGGUUGAUGGUUCUCGCAAAGU -22
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Mature sequence

Efe-Mir-1997-P5_3p
mirBase accessionNone
Sequence 
41- UCUGCAGGUUCACAUCAGCCAUA -64
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