MirGeneDB ID | Ete-Mir-186 |
Family name |
MIR-186 (all species) |
Seed |
AAAGAAU |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-186
Cfa-Mir-186
Cja-Mir-186
Cpo-Mir-186
Dno-Mir-186
Eca-Mir-186
Hsa-Mir-186
Laf-Mir-186
Mdo-Mir-186
Mml-Mir-186
Mmr-Mir-186
Mmu-Mir-186
Neu-Mir-186
Oan-Mir-186
Ocu-Mir-186
Pab-Mir-186
Rno-Mir-186
Sha-Mir-186
|
Node of Origin (locus) |
Mammalia
|
Node of Origin (family) |
Mammalia
|
Genome context (echTel2) |
JH980298: 53142021-53142081 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CCAAACAUUUUUUCAUUGCUUAUAACUUUCCAAAGAAUUCUCCUUUUGGGCUUUCUGAUGUUAUUUUAAGCCCAAAGGUGAAUUUUUUGGGAAGUUUGAGCUAAAAUCCUUCAACCAAAUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCAAACAUUUUUUCAUU---| U U U UCUGAU
GCUUA AACUUUCCAAAGAAUUC CCUUU GGGCUU G
CGAGU UUGAAGGGUUUUUUAAG GGAAA CCCGAA U
AUAAACCAACUUCCUAAAAU^ - U - UUUUAU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ete-Mir-186_5p |
mirBase accession | None |
Sequence |
0- CAAAGAAUUCUCCUUUUGGGCUU -23
Get sequence
|
Star sequence |
Ete-Mir-186_3p* |
mirBase accession | None |
Sequence |
39- GCCCAAAGGUGAAUUUUUUGGG -61
Get sequence
|