MirGeneDB ID | Mdo-Mir-186 |
Family name |
MIR-186 (all species) |
Seed |
AAAGAAU |
Species |
Gray short-tailed opossum (Monodelphis domestica) |
MiRBase ID |
mdo-mir-186
|
Paralogues |
|
Orthologues |
Bta-Mir-186
Cfa-Mir-186
Cja-Mir-186
Cpo-Mir-186
Dno-Mir-186
Eca-Mir-186
Ete-Mir-186
Hsa-Mir-186
Laf-Mir-186
Mml-Mir-186
Mmr-Mir-186
Mmu-Mir-186
Neu-Mir-186
Oan-Mir-186
Ocu-Mir-186
Pab-Mir-186
Rno-Mir-186
Sha-Mir-186
|
Node of Origin (locus) |
Mammalia
|
Node of Origin (family) |
Mammalia
|
Genome context (monDom5_add) |
2: 20448573-20448633 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCCUCACAUUUUUGCUUGCUCACAACCUUCCAAAGAAUUCUCCUUUUGGGCUUUUGAUUCUUAAUUUCAGCCCAAAGGUGAAUUUUUUGGGAUGUUUGAGCUAAAUGCUUCAGCCAUAAUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCCUCACAUUUUUGCUU---| C C U U UUUGAUU
GCUCA AAC UUCCAAAGAAUUC CCUUU GGGCU C
CGAGU UUG AGGGUUUUUUAAG GGAAA CCCGA U
UUAAUACCGACUUCGUAAAU^ - U U - CUUUAAU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Mdo-Mir-186_5p |
mirBase accession | MIMAT0004122 |
Sequence |
0- CAAAGAAUUCUCCUUUUGGGCU -22
Get sequence
|
Proposed targets |
TargetScanVert: mdo-miR-186-5p
|
Star sequence |
Mdo-Mir-186_3p* |
mirBase accession | MIMAT0026676 |
Sequence |
40- CCCAAAGGUGAAUUUUUUGGG -61
Get sequence
|
Proposed targets |
TargetScanVert: mdo-miR-186-3p
|