MirGeneDB 3.0

MirGeneDB ID

Isc-Mir-3931

Family name MIR-3931 (all species)
Seed ACUUUGA
Species Deer tick (Ixodes scapularis)
MiRBase ID isc-mir-3931
Paralogues
Orthologues Csc-Mir-3931-P8a  Csc-Mir-3931-P8b  Lpo-Mir-3931-P1  Lpo-Mir-3931-P2  Lpo-Mir-3931-P3  Lpo-Mir-3931-P4  Lpo-Mir-3931-P5  Lpo-Mir-3931-P6  Lpo-Mir-3931-P7  Tur-Mir-3931 
Node of Origin (locus) Chelicerata
Node of Origin (family) Chelicerata
Genome context
(GCF_016920785.2_ASM1692078v2_ISC)
NW_024609868.1: 81496405-81496463 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GAAGCCCGUCGAAGACUGCACACUGGAUACGAUUUGUACCGACUCUUGGCUAGGUUUUCGAGAAACUACUUUGAGUCGGUACGAAUCCUUUCCUCUCUGCAUAAACUCCACGGCAAGCC
Get precursor sequence
Structure
        10          20        30        40        50         
GAAGCCCGUCGAAGACU--|  CACU   UAC               UU  C   GUUUU 
                   GCA    GGA   GAUUUGUACCGACUC  GG UAG     C
                   CGU    CCU   CUAAGCAUGGCUGAG  UC AUC     G
CCGAACGGCACCUCAAAUA^  CUCU   UUC               UU  -   AAAGA 
       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut +1 on the 5p arm.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Sa Sa To
Star sequence

Isc-Mir-3931_5p*

mirBase accessionNone
Sequence
0- GAUUUGUACCGACUCUUGGCUAGG -24
Get sequence
Mature sequence

Isc-Mir-3931_3p

mirBase accessionMIMAT0021380
Sequence
36- UACUUUGAGUCGGUACGAAUCCU -59
Get sequence