| MirGeneDB ID | Isc-Mir-3931 |
|---|
| Family name |
MIR-3931 (all species) |
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| Seed |
ACUUUGA |
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| Species |
Deer tick (Ixodes scapularis) |
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| MiRBase ID |
isc-mir-3931
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| Paralogues |
|
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| Orthologues |
Csc-Mir-3931-P8a
Csc-Mir-3931-P8b
Lpo-Mir-3931-P1
Lpo-Mir-3931-P2
Lpo-Mir-3931-P3
Lpo-Mir-3931-P4
Lpo-Mir-3931-P5
Lpo-Mir-3931-P6
Lpo-Mir-3931-P7
|
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| Node of Origin (locus) |
Chelicerata
|
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| Node of Origin (family) |
Chelicerata
|
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Genome context
(IscaWI) |
DS763086: 296464-296522 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GAAGCCCGUCGAAGACUGCACACUGGAUACGAUUUGUACCGACUCUUGGCUAGGUUUUCGAGAAACUACUUUGAGUCGGUACGAAUCCUUUCCUCUCUGCAUAAACUCCACGGCAAGCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAAGCCCGUCGAAGACU--| CACU UAC UU C GUUUU
GCA GGA GAUUUGUACCGACUC GG UAG C
CGU CCU CUAAGCAUGGCUGAG UC AUC G
CCGAACGGCACCUCAAAUA^ CUCU UUC UU - AAAGA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Drosha cut +1 on the 5p arm. |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
| Al |
Mi |
Mi |
Mi |
Sa |
Sa |
Sa |
Sa |
To |
| |
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| Star sequence |
Isc-Mir-3931_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GAUUUGUACCGACUCUUGGCUAGG -24
Get sequence
|
|---|
| Mature sequence |
Isc-Mir-3931_3p |
| mirBase accession | MIMAT0021380 |
|---|
| Sequence |
36- UACUUUGAGUCGGUACGAAUCCU -59
Get sequence
|
|---|
