MirGeneDB 3.0

MirGeneDB ID

Lpo-Mir-3931-P5

Family name MIR-3931 (all species)
Seed ACUUUGA
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-3931-P1  Lpo-Mir-3931-P2  Lpo-Mir-3931-P3  Lpo-Mir-3931-P4  Lpo-Mir-3931-P6  Lpo-Mir-3931-P7 
Orthologues Isc-Mir-3931  Tur-Mir-3931 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Chelicerata
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013667763.1: 137491-137550 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAUGAAGCAGGAAUACAUGUUCUGGUGUUGAUUUGUACAGACUCACAGCUAAGUUAUAUUCUCAACUACUUUGAGUCGGUACGAAUCAUUACUGACAUGAAUACCAACAAAAAGAUCAA
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Structure
        10            20        30        40        50        60
AAAUGAAGCAGGAAUAC----|    CU    U          A      C  CUA   UAUA 
                     AUGUU  GGUG UGAUUUGUAC GACUCA AG   AGU    U
                     UACAG  UCAU ACUAAGCAUG CUGAGU UC   UCA    U
AACUAGAAAAACAACCAUAAG^    --    U          G      U  A--   ACUC 
.       110       100          90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ge Ge So So So To
Star sequence

Lpo-Mir-3931-P5_5p* (predicted)

mirBase accessionNone
Sequence
0- GAUUUGUACAGACUCACAGCUAAGU -25
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Mature sequence

Lpo-Mir-3931-P5_3p

mirBase accessionNone
Sequence
37- UACUUUGAGUCGGUACGAAUCAU -60
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