| MirGeneDB ID | Lpo-Mir-3931-P1 |
|---|
| Family name |
MIR-3931 (all species) |
|---|
| Seed |
ACUUUGA |
|---|
| Species |
Atlantic horseshoe crab (Limulus polyphemus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Lpo-Mir-3931-P2
Lpo-Mir-3931-P3
Lpo-Mir-3931-P4
Lpo-Mir-3931-P5
Lpo-Mir-3931-P6
Lpo-Mir-3931-P7
|
|---|
| Orthologues |
Isc-Mir-3931
Tur-Mir-3931
|
|---|
| Node of Origin (locus) |
L. polyphemus
|
|---|
| Node of Origin (family) |
Chelicerata
|
|---|
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013665837.1: 255086-255146 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAGUUACAGAACCUAGCGUGGCUUAGGGGCGGUUUGUACCGAUUCAGGGCAAGGUUCGUCGAAGUAACUACUUUGAGUCGGUACGAAUCACCUCAGCCAUGAUUUUUCAUCGAAAAGACAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAGUUACAGAACCUAGC----| UA C CA GUUCGU
GUGGCU GGGG GGUUUGUACCGAUUCAGGG AG C
UACCGA CUCC CUAAGCAUGGCUGAGUUUC UC G
GACAGAAAAGCUACUUUUUAG^ -- A A- AAUGAA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Lpo-Mir-3931-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GGUUUGUACCGAUUCAGGGCAAGGU -25
Get sequence
|
|---|
| Mature sequence |
Lpo-Mir-3931-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UACUUUGAGUCGGUACGAAUCAC -61
Get sequence
|
|---|
